TCONS_00046444-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046444-protein
Unique NameTCONS_00046444-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046444-protein ID=TCONS_00046444-protein|Name=TCONS_00046444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=449bp
MAETVKIVCSTIPGFESVALNECKEKLNLDAKRDVRGRVAFNIEIEKVQD
LAELRSVHHYWVVVADLEDFFKADQSKEEIFAELTKLPAEIDWTKALETW
KRFRLFKQNNGGLDPVSRKRKQPDGESKNDLDIDYNTITPLTERENLRFR
ATATRTGTHVFSSMESACHLGGGVNDHFHWKVDLKNFDLEVVVYIVDNFI
SVGIQLTKESQSLRNITHFGPTTLKPNISYCLLKSSQAKPGDVICDPMCG
GGSIPLEGAHSLPGVFNLGGDNHSLAVSNAGENIQSYSSKKTREGGTPYT
INMSAVQWDVYCLPLRDACVDHIVTDLPFGKKIGSKERNMFLYPKALKEM
ARVCRPSGRAILLTHHKEAMKKALNKLRDHWRFMETRRINMGGLNVAVYM
LVRTDKPYVKWTGDKKQDETVKTDQEMDKEKKIESVKQSAESTAVTSEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029642XLOC_029642Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046444TCONS_00046444Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004114THUMP_dom
IPR000241RNA_methylase_dom
IPR029063SAM-dependent_MTases
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004114THUMP domainSMARTSM00981THUMP_a_2coord: 119..206
e-value: 1.3E-7
score: 41.2
IPR004114THUMP domainPFAMPF02926THUMPcoord: 140..204
e-value: 6.9E-8
score: 32.6
IPR004114THUMP domainPROSITEPS51165THUMPcoord: 78..206
score: 11.085
IPR000241Putative RNA methylase domainPFAMPF01170UPF0020coord: 215..395
e-value: 6.3E-32
score: 110.8
NoneNo IPR availableGENE3D3.30.2300.10coord: 129..202
e-value: 1.9E-12
score: 46.7
NoneNo IPR availableGENE3D3.40.50.150coord: 214..404
e-value: 2.8E-24
score: 84.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 414..449
NoneNo IPR availableCDDcd11715THUMP_AdoMetMTcoord: 7..207
e-value: 1.29725E-17
score: 78.3909
NoneNo IPR availableSUPERFAMILY143437THUMP domain-likecoord: 142..207
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 201..366

Blast
[Close]
BLAST of TCONS_00046444-protein vs. Swiss-Prot (Human)
Match: THUM3 (THUMP domain-containing protein 3 OS=Homo sapiens GN=THUMPD3 PE=1 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 2.399e-100
Identity = 185/460 (40.22%), Postives = 267/460 (58.04%), Query Frame = 0 
Query:    2 AETVKIVCSTIP-GFESVALNECKEKLNLDAK--RDVRGRVAFNIEIEKVQDLAELRSVHHYWVVVADLEDF-FKADQSKEEIFAELTKLPAEIDWTKALETWK---RFRLFKQNNGGLDPVSRKRKQPDGE-------------SKNDLD---IDY-------NTITPL-------------------TERENLRFRATATRTG-THVFSSMESACHLGGGVNDHFHWKVDLKNFDLEVVVYIVDNFISVGIQLTKESQSLRNITHFGPTTLKPNISYCLLKSSQAKPGDVICDPMCGGGSIPLEGAHSLPGVFNLGGDNHSLAVSNAGENIQSYSSK-KTREGGTPYTINMSAVQWDVYCLPLRDACVDHIVTDLPFGKKIGSKERNMFLYPKALKEMARVCRP-SGRAILLTHHKEAMKKALNKLRDHWRFMETRRINMGGLNVAVYMLVRTDKPYV 409
            +E +  + +T+P GFE  A +E +EKL    K  RD RG++ F I +E +  +  LRSV + +VVV + +D+ FK  Q+KEE+  +   L  ++ W+  L+ WK    F+  K     ++  S K K  +G+             + + LD   +DY         ++ L                   TE + L+FR T  R G  H F+S E+A   GG V D+F WK D+ NFD+EV++ I DN + VGI LT+ES   RNITHFGPTTL+  ++Y +L+     P D+I DPMCG G+IP+EGA      F++ GDN+ LAV+ A  NI S  +K + +EG   + + + AVQWD+  LPLR   VD IVTDLPFGK++GSK+RN  LYP  L+EM+RVC P +GRA+LLT   +   KAL+ +R  WR ++T  +N+GGL  AVY+L+RT + +V
Sbjct:   34 SELLVTIGATVPTGFEQTAADEVREKLGSSCKISRD-RGKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFK--QTKEEVLKDFEDLAGKLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQVLKFRVTCNRAGEKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLAVNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGSKKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVYVLIRTPQAFV 490
The following BLAST results are available for this feature:
BLAST of TCONS_00046444-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
THUM32.399e-10040.22THUMP domain-containing protein 3 OS=Homo sapiens ... [more]
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