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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00046176-protein ID=TCONS_00046176-protein|Name=TCONS_00046176-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1320bp
MEKWFSIVLVVLFSIEAVSTAKVFGCNINSKFFQKTVQLSSCLFCDCNVD
QNNITCFKVDENETRHTVCSNCPQKGDPISVDCPFCQHPFNTSIRIDLGN
TIDISTQSKCVSCQCTKKGKVICQYAGFKDPICSDQDCPYWKIKRYPKEK
CTHCIAPFTREKKMPGEHWFMYNPDYFACNCLKNGYLVCFSKRKYTSVGS
FEPIRFSTYTTKMIEELFQSPDCFFKNQTIKHRSSQFISLYELPYCLQCS
CYFRQLICKRDYNTKCEGYERCNQLANSTKVQKYCNSPSKSLCPSGMSFR
WRSSHCLLKCDPKRRQPVFMKIKKKWCEHVIQNDGYCTPCDGDRDSFLER
HNGSITVCNRTKELLWKSSLCNRVIECSDKEDELNCPKECQITEYEFLGN
RGVMKRGFRFQTRYELSHCSYCLCNNTNGHSTCYKKGLNGIATEKCSKCA
IIIKEPCSYCEKPGNRSIIIPSMHSVNFGNETECISCNCTKQGTISCRYK
DIRQPICGNTQDCETLLATLPKHQCTYCVHPLNGQKKIPLTSWNVQIGSD
NIKCSCSYEGDLICSTDERINGFMYSFQCSEENCTNLMTNPDCRFQNHTI
RHRQSRYVSMYELAFCFECTCFFGQIQCRVRGRSDKEKPIKKDEYDHINK
HCNGDKECSNLALDGDVKRFCSKPAIAYCPSEAIEWSATHCNLTCENPTR
GRARQPNYIKTQTRWCDNMMFTRDQCSPCQQDKEKILAKYEKYLVSCNSS
NQYVWIDQICDSYKDCINGEDERNCTKFYCGFDLDKHGFDWPSREENTTI
VRSCAIDPVIAKNFSRFGLSGNISRKCARDEDDLLHIKWNKTMCACTVSD
FPFFNSTTYDNDITLLTFSTVINALQNIHKHILKSPSNFQHLYEINKILR
LTHKLLTYSYRYDYERLQGLKGYRLMKPVAEMFRTQVMCHAGEEYWKPAV
SVFVSLGKEFDLPDYGFGDFGSSFVRALGATYYTPQARFVVMMEDERLQE
NKHKRSPPKINETHQVHPSSSADNRSSPKKIKKVYIGHTKDALDKFEEVL
SGMSIACLVVGLTTFRFVKEQNMKYFIHQNLMIALLCKNLFYKTTTWFIP
NLPHNSKAGCFTVSILSYFFTLSTFSWMMVEGINIIIIVVFVFKGNRNYH
KQYLAIGYGVPFLLTSIFGGVFNQAFADAIECVVLQRNYLWVLRGPICFY
LLVNGIFFICILMKLRQVAKQRKNMNVNTKSSSSTKTFLVLVPLLGIPFI
LAPFVEYSIYIAYTFVIMNGLTGVYLLVGHVIMDVNVRQDIDTRFDWLKQ
KTVRMRKFSQESTRTRTSTM Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
| GO:0005515 | protein binding |
| GO:0004888 | transmembrane signaling receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
| GO:0007166 | cell surface receptor signaling pathway |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007166 |
cell surface receptor signaling pathway |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0004888 |
transmembrane signaling receptor activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000832 | GPCR, family 2, secretin-like | PRINTS | PR00249 | GPCRSECRETIN | coord: 1076..1100
score: 17.49
coord: 1234..1254
score: 40.84
coord: 1112..1135
score: 24.51
coord: 1191..1216
score: 36.38 |
| IPR000832 | GPCR, family 2, secretin-like | PFAM | PF00002 | 7tm_2 | coord: 1049..1274
e-value: 1.8E-37
score: 128.8 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SMART | SM00192 | LDLa_2 | coord: 746..777
e-value: 0.12
score: 12.5
coord: 350..388
e-value: 0.2
score: 10.3 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SUPERFAMILY | 57424 | LDL receptor-like module | coord: 744..779 |
| None | No IPR available | GENE3D | 4.10.400.10 | | coord: 741..777
e-value: 3.0E-5
score: 23.7 |
| None | No IPR available | GENE3D | 1.20.1070.10 | | coord: 1049..1320
e-value: 6.5E-23
score: 80.6 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1000..1028 |
| IPR017981 | GPCR, family 2-like | PROSITE | PS50261 | G_PROTEIN_RECEP_F2_4 | coord: 1043..1284
score: 26.049 |
Blast
BLAST of TCONS_00046176-protein vs. Swiss-Prot (Human)
Match: CD97 (CD97 antigen OS=Homo sapiens GN=CD97 PE=1 SV=4) HSP 1 Score: 101.293 bits (251), Expect = 1.669e-21 Identity = 60/224 (26.79%), Postives = 111/224 (49.55%), Query Frame = 0
Query: 1071 QNMKYFIHQNLMIALLCKNLFYKTTTWFIPNLPHNSKAGCFTVSILSYFFTLSTFSWMMVEGINIIIIVVFVFKGNRNYHKQYLAIGYGVPFLLTSIFGGVFNQAFADAIECVV-LQRNYLWVLRGPICFYLLVNGIFFICILMKLRQ-VAKQRKNMNVNTKSSSSTKTFLVLVPLLGIPFILAPFV--EYSIYIAYTFVIMNGLTGVYLLVGHVIMDVNVRQD 1290
Q + IH +L I L + + I N C V+ L ++ L+ F WM +EG+ + +VV VF+G + IGYGVP L+ + ++++ + C + ++ +LW GP+ F +L N + F+ + KL Q ++ +M K+ + T T + + LLG ++ F+ + S+ + Y F I+N L G +L + H +++ VR++
Sbjct: 576 QGSRTTIHLHLCICLFVGSTIFLAG---IENEGGQVGLRCRLVAGLLHYCFLAAFCWMSLEGLELYFLVVRVFQGQGLSTRWLCLIGYGVPLLIVGVSAAIYSKGYGRPRYCWLDFEQGFLWSFLGPVTFIILCNAVIFVTTVWKLTQKFSEINPDMKKLKKARALTITAIAQLFLLGCTWVFGLFIFDDRSLVLTYVFTILNCLQGAFLYLLHCLLNKKVREE 796
The following BLAST results are available for this feature:
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