TCONS_00045981-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045981-protein
Unique NameTCONS_00045981-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045981-protein ID=TCONS_00045981-protein|Name=TCONS_00045981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MFQQSKRLKMNDESSTEMPSSSSVADGVVPEADNEEFLATGVPASVTIAL
HPLVIMNISDHYTRIKAQEGVVPKVYGALLGKQNGRNLELYNSFELQHSE
NAEGCVIEMEYFQNKEEQFRQVFSDLDFLGWYTVGSSSATEQDIKIQKQM
ITVNESSLLLKLDPLSKSSNLPITIYESMIDIIDQQPRMLFIKVQYTLVT
EEAERIGVDHVARVSTAAQSEISQVSEYMQVQQSAIKMLSSRVDIILQYV
SAVKDGHIPLDQSIMRQCLSLCQRLPVLNTKEFQGEFHEQCSDITLMSYL
ATITKGCSITNELISKFNVIYDKHGSSRRMRGLFF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029390XLOC_029390Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045981TCONS_00045981Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000555JAMM/MPN+_dom
IPR024969Rpn11/EIF3F_C
IPR033859MPN_CSN6
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0000338protein deneddylation
Vocabulary: Cellular Component
TermDefinition
GO:0008180COP9 signalosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000338 protein deneddylation
cellular_component GO:0008180 COP9 signalosome
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000555JAB1/MPN/MOV34 metalloenzyme domainSMARTSM00232pad1_6coord: 47..181
e-value: 7.6E-17
score: 72.0
IPR000555JAB1/MPN/MOV34 metalloenzyme domainPFAMPF01398JABcoord: 45..155
e-value: 6.2E-20
score: 71.2
IPR024969Rpn11/EIF3F, C-terminalPFAMPF13012MitMem_regcoord: 202..314
e-value: 7.8E-29
score: 100.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
IPR033859COP9 signalosome subunit 6CDDcd08063MPN_CSN6coord: 46..329
e-value: 1.02203E-132
score: 381.986

Blast
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BLAST of TCONS_00045981-protein vs. Swiss-Prot (Human)
Match: CSN6 (COP9 signalosome complex subunit 6 OS=Homo sapiens GN=COPS6 PE=1 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 1.311e-118
Identity = 163/322 (50.62%), Postives = 227/322 (70.50%), Query Frame = 0 
Query:   14 SSTEMPSSSSVADGVVPEADNEEFLATGVPASVTIALHPLVIMNISDHYTRIKAQEGVVPKVYGALLGKQNGRNLELYNSFELQHSENAEGCVIEMEYFQNKEEQFRQVFSDLDFLGWYTVGSSSATEQDIKIQKQMITVNESSLLLKLDPLSKSSNLPITIYESMIDIIDQQPRMLFIKVQYTLVTEEAERIGVDHVARVSTAAQSEISQVSEYMQVQQSAIKMLSSRVDIILQYVSAVKDGHIPLDQSIMRQCLSLCQRLPVLNTKEFQGEFHEQCSDITLMSYLATITKGCSITNELISKFNVIYDKHGSSRRMRGLFF 335
            + T   S   V   VVP       +A GV  SV++ALHPLVI+NISDH+ R+++QEG   +V GAL+GKQ GRN+E+ NSFEL      E  +I+ EY+  KEEQF+QVF +L+FLGWYT G       DI + KQ+  + ES L LKL+P++K ++LP++++ES+IDII+ +  MLF ++ YTL TEEAERIGVDHVAR++     E S V+E++  Q SAIKML SRV +IL+YV A + G +P +  I+R+  +LC  LPVL+T +F+ +F++QC+D+ LM+YL TITK C+  N+ ++KFNV+YD+ G  RRMRGLFF
Sbjct:   12 NGTGGSSGMEVDAAVVPSV-----MACGVTGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGP-PDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQGIGRRMRGLFF 327
The following BLAST results are available for this feature:
BLAST of TCONS_00045981-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSN61.311e-11850.62COP9 signalosome complex subunit 6 OS=Homo sapiens... [more]
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