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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00045974-protein ID=TCONS_00045974-protein|Name=TCONS_00045974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1328bp
MLVGYNYMHHLKTFGYTDKDLEGFDHHDAHDDTIVVLDVNQKMIYYIRVL
TDQAPSIDDYYKEIARCDDFVKSLFMLHGERLTDHSIGVCSLLALPMVQL
KDCDRSLLSVSENSKECCILFKEHLESKDSLKKELDQYLHRIHTIRKSSK
LSANGNHFEKIIAESMATMSLQQAFLPRLTMDTQEQILSLFLNGEQYEAI
NHPNNKRIIRGPFGSGKSLVLEKIAEKLYDSMQEGIIYYICYDPYSLLDA
RMEEIFKEVTDKHQDPGNVKFVTSTVYQLLKDAGETETITNDLVKVMKHC
LQEANGQQVHFLFDEVGIQYSYFTKENADSLKKFVDDESSLAMSTIILAL
QCTEKELTVHDGKGLTVELKNYCNDRINLTGLELLRPLTKSMRMVKNLYK
LKEVAEDKAGQDSVVTALKNNEIPRKPSTPDNNINKKTKAASQPKPSIQS
TTLTTPPRNSTTSLKKIDPSSPSFNIIVEPEVVRTALDGKKEVHKSNENA
TMSSTMNLSPTKISVDQLAMYSTEPFTQDESKSMGGKFEHNFKFHPSKVG
VSIPGKKASIVYLNKSFEMSSLAGAMVLQEILSSEILFQRDVKSTIICSN
QEELDAVMFVIKKVFDEESYCQYTPLISKDIPTREQKRDAWLKCNSPSHK
ILVTDFQSFRGCEAEHCVTFLKANDANYIPHILVEVFARAIAHLSVLVMP
PPSTDNGNGRFQEVLKTWRDEKLADVFEFNSKDTEAGFELTLNSVSGADG
SRVIDSKQINIERSSQEEFDAFKKRSNKDHEITECLRLFNENLAVHVPDI
LSLSLKKLTNDAMSLDQLDFVEQKHFGFLVGYGGAVIKSLKRDLGVDIEI
EEVEKSFKIRGSFEKKVNAVKVIKKMLDTEFWETLDIPDSLHRDILSQKY
HWEQKFQVRVEKTEDRKKIQIQGEIGNVRKVLEEINKISNSRMLNCESVL
TGMKEEKVCSPKPKDGKEERKQVLEGIKTLTPDFLKDEKRKKDIDEALMR
FKEKYCNPPKKDDLKAAKGKFGIVLEDLKLSFKENFLTCKNTEYTGSTYE
GLKISGDGLEFDVMFLFEGGEDLKVLPIKDEEGFAHLALIDNGIVKKNAI
TKSADKDGKILSKKLKDKFKGTLQNFINNSPQYKELITMKEHGPAIQFDI
KRKKDDKDLWYSVDLLPSFEVKVNEEKHIYVPKKIGTDQNSWRRSFSKEE
KALLRDIDSGNKNRREVARTLKAMIKKELKNIPSYAIKTTLLHICYGESK
IDEELWVPQEYTNRVFDMLALLEGYFKEKWLPNYFLPTQNLLKSMNDRNL
EQVENRLRGLRMSHKKFLNLTKTDGDLV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0003723 | RNA binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0003723 |
RNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 121..141 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 184..343
e-value: 2.9E-6
score: 26.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 417..470 |
| None | No IPR available | PROSITE | PS50084 | KH_TYPE_1 | coord: 821..877
score: 11.133 |
| None | No IPR available | CDD | cd00105 | KH-I | coord: 821..874
e-value: 1.04397E-4
score: 40.6211 |
| IPR004087 | K Homology domain | SMART | SM00322 | kh_6 | coord: 814..878
e-value: 0.0014
score: 27.9 |
| IPR024810 | Mab-21 domain | SMART | SM01265 | Mab_21_2 | coord: 1047..1312
e-value: 6.2E-33
score: 125.4 |
| IPR024810 | Mab-21 domain | PFAM | PF03281 | Mab-21 | coord: 1048..1306
e-value: 1.8E-28
score: 99.6 |
| IPR004088 | K Homology domain, type 1 | PFAM | PF00013 | KH_1 | coord: 821..874
e-value: 1.2E-5
score: 25.0 |
| IPR004088 | K Homology domain, type 1 | GENE3D | 3.30.1370.10 | | coord: 820..886
e-value: 3.4E-7
score: 30.0 |
| IPR004088 | K Homology domain, type 1 | SUPERFAMILY | 54791 | Eukaryotic type KH-domain (KH-domain type I) | coord: 821..895 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 204..351 |
Blast
The following BLAST results are available for this feature:
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