TCONS_00045898-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00045898-protein
Unique Name	TCONS_00045898-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	560

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00045898-protein ID=TCONS_00045898-protein|Name=TCONS_00045898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=560bp
MVKRKVSTNGDVKGSKKTKNEKPGMGKLQVTTPGETFGSLLGKVSIETFM
KENWEQKFLHIKREDQEYYGSLFSLEGLKEIVEEEELFFERDINCCRYVD
GEKELLNEGEEISLKDLNELLDKKKATLQFHQPQRFEDGLWNLMEKLETH
FNSLVGANVYITPAESQGLAPHCDDVEIFVLQLEGKKTWKLYEPHVKLSR
DYTQDLLQDAIGEPIYECTLEPGDMLYFPRGTIHQAKTFGDSHSTHISMS
TFQNHCVGDFMDHAVRMAIENAMEDDVTFRQGLPLNYRNFLGTQRDMSKY
VEDDKEDKMSNEKDTEVMKFKKRIKDYLSKLVDHIDVNKAADAMSSDFIG
SRLPPFGHAPPEVDENEAEPPTLDCQIKMRYPEHVRVMYLDEDTEDDEDD
ELEIVEDDEQGDESMEQEEEEKKPAKGAKKNGKEEKDEKPSDEKTSSAKK
TKEKRRSKTASEVEDDEDNDQDAEMTETEYPCIAFVHSLNNERDAHMCGP
QPKMDPSMIKLPVHFARAANFILNAKDFVKVKDIPDLEEDNEKLLLATSL
FADDIIEMKF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_029323	XLOC_029323	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00045898	TCONS_00045898	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003347	JmjC_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.120.650		coord: 21..256 e-value: 1.2E-36 score: 126.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 407..474
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 353..377
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	SUPERFAMILY	51197	Clavaminate synthase-like	coord: 38..356
IPR003347	JmjC domain	PFAM	PF08007	Cupin_4	coord: 47..307 e-value: 1.9E-60 score: 204.9
IPR003347	JmjC domain	PROSITE	PS51184	JMJC	coord: 132..272 score: 23.318

Blast

[Close]

BLAST of TCONS_00045898-protein vs. Swiss-Prot (Human)
Match: RIOX2 (Ribosomal oxygenase 2 OS=Homo sapiens GN=RIOX2 PE=1 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 7.659e-93
Identity = 165/410 (40.24%), Postives = 239/410 (58.29%), Query Frame = 0

Query:    3 KRKVSTNGDVKGSKKTKNEK----PGMGKLQVTTPGETFGSLLGKVSIETFMKENWEQKFLHIKRED---QEYYGSLFSLEGLKEIVEEEELFFERDINCCRYVDGEKELLNEGEEISLKDLNELLDKKKATLQFHQPQRFEDGLWNLMEKLETHFNSLVGANVYITPAESQGLAPHCDDVEIFVLQLEGKKTWKLYEPHVKLSRDYTQDLLQDAIGEPIYECTLEPGDMLYFPRGTIHQAKT-FGDSHSTHISMSTFQNHCVGDFMDHAVRMAIENAMEDDVTFRQGLPLNYRNFLGTQRDMSKYVEDDKEDKMSNEKDTEVMKFKKRIKDYLSKLVDHIDVNK--AADAMSSDFIGSRLPPFGHA-PPEVDENEAEPPTLDCQIKMRYPEHVRVMYLDEDTEDDEDDE 401
            K K + +G  +G    K  K     G   L   +P   F SL+  +  ETF KE WEQK L I+R+D     YYGSLF L  LK +     +++ RD+N CR V+G+K++LN+  +     L +  D+K+AT+QFHQPQRF+D LW + EKLE +F SLVG+NVYITPA SQGL PH DDVE+F+LQLEG+K W+LY P V L+R+Y+ +  ++ IG P++E  L+PGD+LYFPRGTIHQA T  G +HSTH+++ST+QN+  GDF+   +   + +  ++DV  R G+P          R +   VE            T V    +R+  +L  L D ++  K   +  M  DFI  RLPP+      E+     + P LD  +++++ +H+ +  L +  + DE  E
Sbjct:    4 KAKPTGSGKEEGPAPCKQMKLEAAGGPSALNFDSPSSLFESLISPIKTETFFKEFWEQKPLLIQRDDPALATYYGSLFKLTDLKSLCSRG-MYYGRDVNVCRCVNGKKKVLNKDGKAHFLQLRKDFDQKRATIQFHQPQRFKDELWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVE-AEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFLLDTISGLVFDTAKEDVELRTGIP----------RQLLLQVE-----------STTVA--TRRLSGFLRTLADRLEGTKELLSSDMKKDFIMHRLPPYSAGDGAELSTPGGKLPRLDSVVRLQFKDHIVLTVLPDQDQSDEAQE 388

The following BLAST results are available for this feature:

BLAST of TCONS_00045898-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00045898-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RIOX2	7.659e-93	40.24	Ribosomal oxygenase 2 OS=Homo sapiens GN=RIOX2 PE=...	[more]

You are here

TCONS_00045898-protein (polypeptide) - C. hemisphaerica