TCONS_00045878-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045878-protein
Unique NameTCONS_00045878-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045878-protein ID=TCONS_00045878-protein|Name=TCONS_00045878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MGEDVGLVKAPRICEMIREESGYGFNLHGEKGVIGQYISAIDPGSAAEKS
GLCVGDRVVEVNEVNVEAMSHGEVVQQIRTDPKKAILLVVDKITDNYLKK
INRPVTSALATYTTVHEITIEEAEKLQELRLQAEQQQNVTDDADDDGNTQ
LSVEDENVELQDSDSLPSNGEEPENEAPGDTPESEKISSVPGDIESPPLN
SHTSISPEPEEPTNQDPPPEESQPEESQPDENISQPDENISQPDENISQL
DENISQPEDPDYAILESPPPEKRSVIESPAEKGSVIEAPQDESTMPDSPQ
PEQESAEPVXQQC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029317XLOC_029317Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045878TCONS_00045878Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 116..146
NoneNo IPR availableGENE3D2.30.42.10coord: 8..100
e-value: 6.0E-20
score: 70.5
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 11..90
e-value: 2.84632E-11
score: 57.5767
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 21..93
e-value: 1.1E-16
score: 71.5
IPR001478PDZ domainPFAMPF00595PDZcoord: 18..84
e-value: 2.4E-15
score: 56.5
IPR001478PDZ domainPROSITEPS50106PDZcoord: 13..93
score: 15.441
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 5..96

Blast
[Close]
BLAST of TCONS_00045878-protein vs. Swiss-Prot (Human)
Match: NHRF2 (Na(+)/H(+) exchange regulatory cofactor NHE-RF2 OS=Homo sapiens GN=SLC9A3R2 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.884e-26
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 0 
Query:   11 PRICEMIREESGYGFNLHGEKGVIGQYISAIDPGSAAEKSGLCVGDRVVEVNEVNVEAMSHGEVVQQIRTDPKKAILLVVDKITDNYLKKINRPVTSALA 110
            PR+C ++R E GYGF+LHGEKG  GQ+I  ++PGS AE + L  GDR+VEVN VNVE  +H +VVQ+I+    +  LLVVD+ TD  L++     T  +A
Sbjct:    9 PRLCRLVRGEQGYGFHLHGEKGRRGQFIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHHQVVQRIKAVEGQTRLLVVDQETDEELRRRQLTCTEEMA 108

HSP 2 Score: 97.4413 bits (241), Expect = 4.017e-23
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 0 
Query:   11 PRICEMIREESGYGFNLHGEKGVIGQYISAIDPGSAAEKSGLCVGDRVVEVNEVNVEAMSHGEVVQQIRTDPKKAILLVVDKITDNYLKKIN 102
            PR+C + +   GYGFNLH +K   GQYI ++DPGS A +SGL   DR++EVN  NVE + H EVV  I+    +A LLVVD  TD + K++ 
Sbjct:  149 PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVDPETDEHFKRLR 240
The following BLAST results are available for this feature:
BLAST of TCONS_00045878-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NHRF21.884e-2650.00Na(+)/H(+) exchange regulatory cofactor NHE-RF2 OS... [more]
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