TCONS_00045804-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045804-protein
Unique NameTCONS_00045804-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045804-protein ID=TCONS_00045804-protein|Name=TCONS_00045804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=470bp
MLFILLFNLIQDQWKSNFHDAEYADILKLPPQPVTSPTQPKSILKGTEQK
AKQKVVRSSSLNRGVIKRTPVLSPVRANNDSPLPGIIRSRRHSIGSTASL
ERSLSKISLKEPAEVASSLMPEYSKGSRISSCTSVRRANSKLGVCGLENL
GNTCFMNSILQCLSKDRTLREYFCDRKYKKDCKGACRLTNAFGEFMDNIW
SKSEPSYISPRSVKLEVQKLAPKFVGNHQHDSQEFLRYLIEGVHDELNVV
KTKPTYSYDDLDDMRDDEKARVVWERYLSRESSLIQDLFVGQLRSTLTCS
QCGHASVTFDPFWDLSLPIPIKRGDVADIAECFQTFTQEEILDGAEKPTC
EKCKKRRKCTKKFLIERCPKVLVIHLKRFAGQRYRTKLSTHVIFPTELDI
KQYTVAKESRRYQLFGVSNHIGGTAGGHYTAYCKHPDSGKWNLYNDTRVS
PATPSSVNTAGAYVLFYELM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029279XLOC_029279Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045804TCONS_00045804Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR018200USP_CS
IPR028889USP_dom
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016579 protein deubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.70.10coord: 136..470
e-value: 1.3E-105
score: 352.3
NoneNo IPR availableCDDcd02674Peptidase_C19Rcoord: 146..468
e-value: 2.19835E-82
score: 255.675
NoneNo IPR availableSUPERFAMILY54001Cysteine proteinasescoord: 143..468
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 145..467
e-value: 4.1E-65
score: 219.7
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00973USP_2coord: 412..429
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00972USP_1coord: 146..161
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 145..470
score: 64.494

Blast
[Close]
BLAST of TCONS_00045804-protein vs. Swiss-Prot (Human)
Match: UBP2 (Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2 PE=1 SV=2)

HSP 1 Score: 338.576 bits (867), Expect = 2.850e-110
Identity = 167/339 (49.26%), Postives = 231/339 (68.14%), Query Frame = 0 
Query:  138 ANSKLGVCGLENLGNTCFMNSILQCLSKDRTLREYFCDRKYKKDCKGACR----LTNAFGEFMDNIWSKSEPSYISPRSVKLEVQKLAPKFVGNHQHDSQEFLRYLIEGVHDELNVVKTKPTYSYDDLDDMRDDEKARVVWERYLSRESSLIQDLFVGQLRSTLTCSQCGHASVTFDPFWDLSLPIPIKRGDVADIAECFQTFTQEEILDGAEKPTCEKCKKRRKCTKKFLIERCPKVLVIHLKRFAGQRYRT-KLSTHVIFPT-ELDIKQYTVAKESRR-YQLFGVSNHIGGTAGGHYTAYCKHPDSGKWNLYNDTRVSPATPSSVNTAGAYVLFYEL 469
            + S  G+ GL NLGNTCFMNSILQCLS  R LR+Y   R Y +D          L   F + +  IW+ S    +SP   K ++Q+ AP+FVG +Q D+QEFLR+L++G+H+E+N V  +P  + ++LD + DDEK R +W +YL RE S I DLFVGQL+S+LTC+ CG+ S  FDPFWDLSLPI  +      + +C + FT+E++LDG EKPTC +C+ R++C KKF I+R PK+LV+HLKRF+  R RT KL+T V FP  +LD++++     +   Y L+ VSNH G T GGHYTAYC+ P +G+W+ +ND+ V+P + S V T+ AY+LFYEL
Sbjct:  260 SKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYEL 598
The following BLAST results are available for this feature:
BLAST of TCONS_00045804-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBP22.850e-11049.26Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sa... [more]
back to top