TCONS_00045742-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045742-protein
Unique NameTCONS_00045742-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2787

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045742-protein ID=TCONS_00045742-protein|Name=TCONS_00045742-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2787bp
SSYTSSFKMTKNNKCFLYGIAILFLLRIACVATLQVSYNPTEKSLCSGEY
TLFIQSNLTLTITLDQPGSVEYTYNGMQKTMQFIDTAIEIRQTFDTVGVY
TITITTPEGDWDKQIRVVNTPLHLINATVSYTYVMPGEVFTGQVVDPENS
ASYKWYARKFGNGIPWELVNSGQSVSHQYEMKGRHEFLVTNGTWQSPCRT
SWRMNVYVINPIFYFGKPDIPMKDQEQLITANIHNVSEVGDFIWKFDGEE
ISSCKSRTRIVKVQTFVCKVQLGAFDQQLQVILKPDDVTAQTHSVTMSPI
TSFNIYPRYVQKGSLTEMHVSQVVGNYQTHRWIDVQRTGREDQDVTSWTA
YHQFDNEVGLDVLVVDVFNQISYLRKYFLIHIVDINSYKLRNSHSGHLFD
TETTVPMGTIITFSIEDVTASTEYEWDVPVIQNASVAPAVNNQSRSFTLE
DSSESNPEPWSFSFRITSTLDWAPEVEPARDFTIYVYKEISSIKTDIIVQ
SLLVVDSHYQFKILWYGSEGECSVLKNTFPTPPNVTNSVQHFCSIDIQAP
SQPITDLNLEIRIQNRLNFIDKVFNFRALNYVEHLNITHYEYLTRSLTHI
FHVMEPTLDTTYNWYLIENSTEIIKQQTIGETANFTIDETFEVGYYKVLL
NAAGHVFRTGFLSTSYETRVVAFQIHPEAYPDAIVNPNENSTISLSIGHH
ILGATYTWYFRDEASGNWTGIGNGQNLTFHVPPSLSEGVFNIQVQAEGFW
VLHGIQTENVTFVVCHPTEPRVAPSVNRTLLSSSAIYTSTIIETQCITRH
VWSIHCTDQIDPNCDSNGIFTPNLLPELMVDFENPSLELPARSLTNSHYV
LKNQIKVREISVFNVSIQVEVKSSDLVPIISGGDSRTVGSVDDVIIHSKT
LDPDHLTLLQTTVYRWDLNVTCFQNQDGSSAVGTWSNANREIKAIPGCLH
ENITYNVEMFVKRRMSDIEVYSTEQKVRIVPGSIIPVIITSPSISAFQTD
RYNSMNENKFSLESCDQCEDFKWTVTGLTDGKDLFLRTTNRSYLVISEQT
LDGIQDFNVNVEVKSATGSKGFASIIIRPNRLPENGTCRTITPIEGWAME
TKFNIECFDWTDRDSIENVFTYLFVLSENGELFTRSYDAMFEVLLPPGTE
SNGWKLLFEVWVMDTLGGVTVALKSEVIVKVRPSSNPPQIIQQNVIHKLD
TAIEKKEKVKALSLIIGSAIFLSYGDPKNNISISLVNKLTIQSSEIKPSI
LQDVRMIVSASFLLRQAIEMSDLEIGTRRKMLDSMKQSISFSDILAKIDS
ALPERAHQRLFYLLQDNFDFDTYFTNLQNTENPNYETIQNVYELVLRNLV
NNEDRIFKSHSIAADIQKINTAYDRYLEQKVSVGECEFDYQIMSKQQMAN
EIRECSRHNPYARTDSNSSIASLTFKDESLKEVAIKELSRNESVKLSIPT
TPETAEPQNVFTLKQNELAYINIRKALTYIYSGDLNTALTVSVNVTQGVQ
NEGLLYIHRSEMIEPQKDNMTTVVFEQKFNEQANRTLVITGSDFSNYENL
YFGVHHDSASTLQVEFNFVITKCHFWNVTSFKWDGTGCRVTNMSSNDVIT
GDVICLCNHLTSFGAGLRVVPNELDFTVLREIDFEENPIALVTILVALAL
YLILLFMACRKDNQESQKDHVITFIGSEESFYHYEIRIKTGMYPYSGTSS
RVGIQMFGTSCVTKTRVLKTPQSFQRNSLDIFRISLDQSIGKLHKIEIWH
DHSGDATEWFLERVVIKNLVDGEKFFFFCNEWIGPRHENGNAVHKFHVAD
KHELNKFSVIFYDMIGRCLNDLHMWFSLFERPKYSRFNRKQRLSCLFTFL
FTWMAVNAMWFDDGQQTYIDSSSYSYQIKGFSLQEIIIGLITVLMVCPLN
FLFWLLFRKSRQKEIPNKLLKVWKKPRRVHTDFINIMDATYHDNDSDDED
DENLETQSLIRRKMKCRDIHDLLEESLNAEDVGVDTCNLSLSSTTTSSKT
PLLLPRTFGGLSGQNEEGMEESTYEFFEKWKVENFGSTQLPMTPSKSSYS
KHESEKHSVSCCTLRGETLPKIRRTHSAGGSSVDLLEDARFTNIRERVHS
AHYSTIGQEDFTVFHFNKHAQQIQRNEQLAKELAIPDIMEYDPIIYWTLP
YWCVYIGYLCCFSLSTFCIIVVLTYGQQFGREKALKWLKSLLFGFVEDIF
FVYPLLMILVSAVTALFIKPLDLDVIDHLDFKICASSPAQKSLTNVYSPN
TNILPIIAKSSRAQHKRRKRTRDLVLQIVMTWLALIVATNNDVIFSVDNK
SFHQQLQRFGGEYLSSVTDINLYNYWSWFETTLATSPYQQDNEQQTWQHV
LPPSVQQNRFVPIKCLDQEYQKYAKIEKCYKPSHSIKTSSFEEYFFSSSI
SKSTKSGNYEWAFPTLNDTNALAILSTDVQTVKKSTWISGKTRGLIHRML
YFNTDIQLYAYYENKAYVLDGGHKKIESNIVYFNTDADININDFFVLLSL
FVILLCSVYIALRRLIRNIPSAQFTRRFWFYHNLCWLVVALLAFIKYLSY
VSIVHEFNASQTKSFELLKSLVADYDHTRNLITTLLFLILIRWIRILRWS
SAYRIVREMVFQTICPMIGFVIVHLFITLIFAHPLYLLCHELHKDYSTFK
DTYVSLLLFPWSTPIIDGEREQKPATSLLRFLHLSYACVFALLVFKPLVL
SVYLRDVRLKDKKNKDSNLLWKMFQVILKRVKNKTHPKINKHVHFKVEEI
DTKSNRSLSTITTIDVIPXHKKQSFSIHHHHNRCHTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029232XLOC_029232Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045742TCONS_00045742Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000434PC1
IPR000203GPS
IPR001024PLAT/LH2_dom
IPR002859PKD/REJ-like
IPR013783Ig-like_fold
IPR013122PKD1_2_channel
Vocabulary: Biological Process
TermDefinition
GO:0001822kidney development
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001822 kidney development
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000434Polycystic kidney disease type 1 proteinPRINTSPR00500POLYCYSTIN1coord: 2581..2603
score: 31.88
coord: 1638..1659
score: 21.21
coord: 2617..2638
score: 18.94
coord: 1842..1864
score: 23.19
coord: 1885..1909
score: 29.33
IPR000203GPS motifSMARTSM00303GPS_3coord: 1569..1622
e-value: 6.1E-4
score: 29.1
IPR000203GPS motifPFAMPF01825GPScoord: 1572..1614
e-value: 2.5E-5
score: 24.8
IPR000203GPS motifPROSITEPS50221GPScoord: 1570..1623
score: 12.452
IPR001024PLAT/LH2 domainSMARTSM00308LH2_4coord: 1682..1800
e-value: 1.1E-13
score: 61.5
IPR001024PLAT/LH2 domainPFAMPF01477PLATcoord: 1684..1789
e-value: 3.6E-21
score: 75.8
IPR001024PLAT/LH2 domainGENE3D2.60.60.20coord: 1680..1807
e-value: 1.7E-31
score: 108.4
IPR001024PLAT/LH2 domainPROSITEPS50095PLATcoord: 1682..1797
score: 35.924
IPR001024PLAT/LH2 domainSUPERFAMILY49723Lipase/lipooxygenase domain (PLAT/LH2 domain)coord: 1682..1787
IPR002859PKD/REJ-like domainPFAMPF02010REJcoord: 832..1210
e-value: 1.5E-41
score: 142.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 118..213
e-value: 0.0061
score: 16.4
IPR013122Polycystin cation channel, PKD1/PKD2PFAMPF08016PKD_channelcoord: 2405..2657
e-value: 1.3E-7
score: 30.6

Blast
[Close]
BLAST of TCONS_00045742-protein vs. Swiss-Prot (Human)
Match: PKD1 (Polycystin-1 OS=Homo sapiens GN=PKD1 PE=1 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 8.224e-48
Identity = 143/523 (27.34%), Postives = 241/523 (46.08%), Query Frame = 0 
Query: 1417 NSSIASLTFKDESLKEVAIKELSRNESVKLSIPTTPETAEPQNVFTLKQNELAYINIRKALTYIYSGDLNTALTVSVNVTQGVQ---NEGLLYIH-RSEMIEPQKDNMTTVVFEQKFNEQ---ANRTL---VITGSDFSNYENLYFGVHHDSA-------------STLQVEFNFVITKCHFWNVTSFKWDGTGCRVTNMSSNDVITGDVICLCNHLTSFGAGLRVVPNELDFTVLREIDFEENPIALVTILVALALYLILLFMACRKDNQESQKDHVITFIGSEESFYHYEIRIKTGMYPYSGTSSRVGIQMFGTSCVTKTRVLKTPQSFQRNSLDIFRISLDQSIGKLHKIEIWHDHSGDATEWFLERVVIKNLVDGEKFFFFCNEWIGPRHE-NGNAVHK-FHVADKHELNKFSVIFYDMIGRCLNDLHMWFSLFERPKYSRFNRKQRLSCLFTFLFTWMAVNAMWFDD-GQQTYIDSSSYSYQIKGFSLQEIIIGLITVLMVCPLNFLFWLLFRKSRQK 1913
            ++ +AS+ F+ ++  ++ I+ L+   ++ + +P   + A   +  +        +  + ++  + + D       S N   G+    N  LL  H  SE  EP+      +  E + NE    A+R +    + G+D   Y         D A             S LQV      + C +++     W   G      +S        +CL  HLT+FGA L V P+ + F V  E   + N I ++T  V L  Y+++  +  + D  ++ +   I F G    F  YEI +KTG    SGT++ VGI ++G    +  R L   ++F RNSLDIFRI+   S+G + KI +WHD+ G +  WFL+ V++++L      FF  N+W+    E NG  V K    A    L +F  +    + R   D H+W S+++RP  SRF R QR +C    +  ++  NA+W+   G   Y  S+ +  ++   S+  + +GL++ ++V P+      LFR SR K
Sbjct: 2845 STKVASMAFQTQAGAQIPIERLASERAITVKVPNNSDWAARGHRSSANSANSVVVQPQASVGAVVTLD-------SSNPAAGLHLQLNYTLLDGHYLSE--EPEPYLAVYLHSEPRPNEHNCSASRRIRPESLQGADHRPYTFFISPGSRDPAGSYHLNLSSHFRWSALQVSVGLYTSLCQYFSEEDMVWRTEGLLPLEETSPR----QAVCLTRHLTAFGASLFVPPSHVRF-VFPEPTADVNYIVMLTCAVCLVTYMVMAAILHKLDQLDASRGRAIPFCGQRGRF-KYEILVKTGWGRGSGTTAHVGIMLYGVDSRSGHRHLDGDRAFHRNSLDIFRIATPHSLGSVWKIRVWHDNKGLSPAWFLQHVIVRDLQTARSAFFLVNDWLSVETEANGGLVEKEVLAASDAALLRFRRLLVAELQRGFFDKHIWLSIWDRPPRSRFTRIQRATCCVLLICLFLGANAVWYGAVGDSAY--STGHVSRLSPLSVDTVAVGLVSSVVVYPVYLAILFLFRMSRSK 3350
The following BLAST results are available for this feature:
BLAST of TCONS_00045742-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PKD18.224e-4827.34Polycystin-1 OS=Homo sapiens GN=PKD1 PE=1 SV=3[more]
back to top