TCONS_00045708-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045708-protein
Unique NameTCONS_00045708-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045708-protein ID=TCONS_00045708-protein|Name=TCONS_00045708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
ITGMSSELPTPHDHYTMFDSDEDIDPSPGSIADQPRSIRSSTRKLREGWR
GSNEKPSIHHIPISTVYKDRPSPMASRHRNSTNSIASNTYSPPSNPYPIA
SASAEELLYQDQPKTFPNQVSAHNFESKTMMYKDSTESLGGRKEGGHRRT
KSEGGGLVTTSQNFISITPQLENTEKTLFCEPISEKLICLLCKSVFREPV
ITNCGHTFCRQCVLSAAKESTCPTDGTQLSVGPVNIAIRDQVGELLIHCK
YGCSPASSGVPGEYEID
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029212XLOC_029212Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045708TCONS_00045708Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 189..225
e-value: 9.6E-7
score: 38.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 189..225
score: 11.53
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 189..224
e-value: 3.2604E-6
score: 42.0476
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 67..246
e-value: 4.8E-13
score: 48.2
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 189..224
e-value: 6.3E-8
score: 32.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..157
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 181..250
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 204..213

Blast
[Close]
BLAST of TCONS_00045708-protein vs. Swiss-Prot (Human)
Match: TRAF7 (E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens GN=TRAF7 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.688e-25
Identity = 48/90 (53.33%), Postives = 62/90 (68.89%), Query Frame = 0 
Query:  178 LFCEPISEKLICLLCKSVFREPVITNCGHTFCRQCVLSAAKESTCPTDGTQLSVGPVNIAIRDQVGELLIHCKYGCSPASSGVPGEYEID 267
            +F E  S KL C LC SVF++PVIT CGHTFCR+C L + K   CP D  +L+V   NIA+ +Q+GEL IHC++GC  A SG P  +E+D
Sbjct:  120 VFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCALKSEK---CPVDNVKLTVVVNNIAVAEQIGELFIHCRHGCRVAGSGKPPIFEVD 206
The following BLAST results are available for this feature:
BLAST of TCONS_00045708-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF74.688e-2553.33E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens ... [more]
back to top