TCONS_00045653-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00045653-protein
Unique Name	TCONS_00045653-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	194

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00045653-protein ID=TCONS_00045653-protein|Name=TCONS_00045653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MDHSNMNHTMPEINGTNHHNHHQMNNTGNHMMGHQMPMYFHGGTMVTLFF
KDWMTMNQSEFDGACVALFVLATLYEGLKILRKFLLVKMLNDKKVRDVNP
SISKSSQQKDDAITIHNKQMFKIRVIVHLIQTVLHVIQVFLGYLLMLAFM
TYNSLVCVSILLGYGFGYLVFAWYDLTIANGVAVKTNDSDCCNL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_029189	XLOC_029189	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00045653	TCONS_00045653	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007274	Cop_transporter

Vocabulary: **Biological Process**
Term	Definition
GO:0035434	copper ion transmembrane transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005375	copper ion transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035434	copper ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005375	copper ion transmembrane transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007274	Ctr copper transporter	PFAM	PF04145	Ctr	coord: 38..171 e-value: 1.9E-29 score: 103.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Blast

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BLAST of TCONS_00045653-protein vs. Swiss-Prot (Human)
Match: COPT1 (High affinity copper uptake protein 1 OS=Homo sapiens GN=SLC31A1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.256e-26
Identity = 69/193 (35.75%), Postives = 95/193 (49.22%), Query Frame = 0

Query:    1 MDHSN-MNHTMPEINGTNHHNHHQMNNTGNHMMGH------QMPMYFHGG-TMVTLFFKDWMTMNQSEFDGACVALFVLATLYEGLKILRKFLLVK-----MLNDKKVRDVNPSISKSSQQKDDAITIHNKQMFKIRVIVHLIQTVLHVIQVFLGYLLMLAFMTYNSLVCVSILLGYGFGYLVFAWYDLTIAN 180
            MDHS+ M  +  + N T   +HH    + +H  G        MPM F+ G   V L F   +     E  GA VA+F+LA  YEGLKI R+ LL K       N   V   N +I   + +         +QM       HL+QTVLH+IQV + Y LML FMTYN  +C+++  G G GY +F+W    + +
Sbjct:    1 MDHSHHMGMSYMDSNSTMQPSHHHPTTSASHSHGGGDSSMMMMPMTFYFGFKNVELLFSGLVINTAGEMAGAFVAVFLLAMFYEGLKIARESLLRKSQVSIRYNSMPVPGPNGTILMETHKTV------GQQMLSFP---HLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKAVVVD 184

The following BLAST results are available for this feature:

BLAST of TCONS_00045653-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00045653-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
COPT1	5.256e-26	35.75	High affinity copper uptake protein 1 OS=Homo sapi...	[more]

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TCONS_00045653-protein (polypeptide) - C. hemisphaerica