TCONS_00045581-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00045581-protein
Unique Name	TCONS_00045581-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	538

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00045581-protein ID=TCONS_00045581-protein|Name=TCONS_00045581-protein|organism=Clytia hemisphaerica|type=polypeptide|length=538bp
MKLSFESTILLLFLVLAYFHPSSAKNPCTAHSDCGSCFRANGDCAFCKDE
DFSSSGVRLDRCNYANVLKELGCKSLMNVQGEHKFEKEENFTFFRQVSPQ
KITLNLRPAQTNKFKIKVKPAKGFPVDLYYLMDMSKSMENDLNELNKLGI
KIADEIGEITPKYRLAFGSFVDKTVAPFIQPAQLNKPCMLEDNVTPCKPT
FGYNHIFDFNDNKTSFQERINQQNISGNLDTPEGGFDALMQVASCNSTLN
WEPVDRAHRIVIFVTDATPHIAGDGKLGGIIQPNDGLCHLQTSTNDQSTK
EYTQSNKQDYPSISKLKSKLKSNDIIPIFAVTENVQSVYKKIVDEWKDMN
ARIGVLKGDSSNIVELIRKTYSEIITTIRLSDNSPSDIKVFYKADESCPN
VIEEGAGCSNITAGDEYGFDVMVTATNCPKGVAQVPTQSFVINIPGLGKI
DVDVNLQCECPCEAPGMGVQNSTLCNGTGTFQCGICYCGSGYHGEKCECD
NEAEADDTLCIPNNTTDVVCSGAGSCVCGECVCNKRLV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_029143	XLOC_029143	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00045581	TCONS_00045581	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015812	Integrin_bsu
IPR002369	Integrin_bsu_VWA
IPR033760	Integrin_beta_N
IPR002035	VWF_A
IPR032695	Integrin_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015812	Integrin beta subunit	PRINTS	PR01186	INTEGRINB	coord: 124..142 score: 69.98 coord: 520..533 score: 67.72 coord: 347..371 score: 37.93 coord: 31..47 score: 32.24 coord: 164..183 score: 54.81 coord: 197..216 score: 31.67 coord: 230..252 score: 55.88 coord: 96..109 score: 54.23
IPR015812	Integrin beta subunit	PROSITE	PS00243	INTEGRIN_BETA	coord: 520..533
IPR002369	Integrin beta subunit, VWA domain	SMART	SM00187	INB_2	coord: 33..462 e-value: 2.5E-154 score: 528.7
IPR002369	Integrin beta subunit, VWA domain	PFAM	PF00362	Integrin_beta	coord: 122..376 e-value: 2.0E-90 score: 302.7
None	No IPR available	GENE3D	2.60.40.1510		coord: 320..475 e-value: 8.6E-34 score: 116.4
None	No IPR available	GENE3D	2.10.25.10		coord: 476..502 e-value: 2.8E-4 score: 20.4
None	No IPR available	GENE3D	2.10.25.10		coord: 505..538 e-value: 4.3E-5 score: 23.2
None	No IPR available	GENE3D	2.60.40.1510		coord: 85..248 e-value: 7.2E-27 score: 93.9
None	No IPR available	SUPERFAMILY	103575	Plexin repeat	coord: 25..75
IPR033760	Integrin beta N-terminal	PFAM	PF17205	PSI_integrin	coord: 26..74 e-value: 1.3E-7 score: 31.2
IPR002035	von Willebrand factor, type A	SUPERFAMILY	53300	vWA-like	coord: 121..375
IPR032695	Integrin domain	SUPERFAMILY	69179	Integrin domains	coord: 383..464

Blast

[Close]

BLAST of TCONS_00045581-protein vs. Swiss-Prot (Human)
Match: ITB1 (Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2)

HSP 1 Score: 349.362 bits (895), Expect = 1.947e-111
Identity = 210/532 (39.47%), Postives = 295/532 (55.45%), Query Frame = 0

Query:   34 CGSCFRANGDCAFCKDEDFSSSGVRLD-RCNYANVLKELGC--KSLMNVQGEHKFEKEENFTF-------------FRQVSPQKITLNLRPAQTNKFKIKVKPAKGFPVDLYYLMDMSKSMENDLNELNKLGIKIADEIGEITPKYRLAFGSFVDKTVAPFIQ--PAQLNKPCMLEDNVTPCKPTFGYNHIFDFNDNKTSFQERINQQNISGNLDTPEGGFDALMQVASCNSTLNWEPVDRAHRIVIFVTDATPHIAGDGKLGGIIQPNDGLCHLQTSTNDQSTKEYTQSNKQDYPSISKLKSKLKSNDIIPIFAVTENVQSVYKKIVDEWKDM--NARIGVLKGDSSNIVELIRKTYSEIITTIRLSDNSPSD-IKVFYKADESCPNVI----EEGAGCSNITAGDEYGFDVMVTATNCPKGVAQVPTQSFVINIPGLGKIDVDVNLQCECPCEAPGMGVQNSTLCN-GTGTFQCGICYCGSGYHGEKCECDNE---AEADDTLCIPNNTTDVVCSGAGSCVCGECVCNKR 536
            CG C +A  +C +C +  F   G+    RC+    LK+ GC    + N +G    +K +N T                Q+ PQ++ L LR  +   F +K K A+ +P+DLYYLMD+S SM++DL  +  LG  + +E+  IT  +R+ FGSFV+KTV P+I   PA+L  PC  E N   C   F Y ++    +    F E + +Q ISGNLD+PEGGFDA+MQVA C S + W  V    R+++F TDA  H AGDGKLGGI+ PNDG CHL+ +        YT S+  DYPSI+ L  KL  N+I  IFAVTE  Q VYK    E K++   + +G L  +SSN+++LI   Y+ + + + L +   S+ + + YK+   C N +    E G  CSNI+ GDE  F++ +T+  CPK      + SF I   G  + +V+V LQ  C CE    G+  S  C+ G GTF+CG C C  G  G  CEC  +   +E  D  C   N+++ +CS  G CVCG+CVC KR
Sbjct:   35 CGECIQAGPNCGWCTNSTFLQEGMPTSARCDDLEALKKKGCPPDDIENPRGSKDIKKNKNVTNRSKGTAEKLKPEDITQIQPQQLVLRLRSGEPQTFTLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQN---CTSPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVT---RLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNM-------YTMSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYK----ELKNLIPKSAVGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGVTISYKS--YCKNGVNGTGENGRKCSNISIGDEVQFEISITSNKCPKK----DSDSFKIRPLGFTE-EVEVILQYICECECQSEGIPESPKCHEGNGTFECGACRCNEGRVGRHCECSTDEVNSEDMDAYCRKENSSE-ICSNNGECVCGQCVCRKR 541

The following BLAST results are available for this feature:

BLAST of TCONS_00045581-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00045581-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ITB1	1.947e-111	39.47	Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2	[more]

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TCONS_00045581-protein (polypeptide) - C. hemisphaerica