TCONS_00045554-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045554-protein
Unique NameTCONS_00045554-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length489

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045554-protein ID=TCONS_00045554-protein|Name=TCONS_00045554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=489bp
METKGYSFKLSGQDVSEFRCNICKLLLREATELPCTHMFCQACLWEWHMD
PKSKAGESLDEQTDFYECPDCHQSYSIEQIRRSAVTDKVITTSLMVKCHF
SKYGCSWTGHIVQFQEHKLKCDFTSASCPFQGCYKVLNRGQLKKHKKNCQ
HRFATCTECGKKYETKDGHSCKIECPNDGCYVQVPEDEMGAHRDRCPKEL
VKCGYVMHKYYSSAPKFRREDLLSHCKECKEGKMVELLKGNECRKMKSRI
WELERKIAQLPTTIKDYDDDIENFEKEIEDLPPKLKQIQTLQEAKEMDGQ
PTSLPVENFHSDLATQEKLTENLVRFIKSDNILELVTTINQHPEIKPNVS
DLINNSIWSKSNKCLVFVLTRYSNELTENEMKEHWTKAITSNREGIHPSI
PILLKFYPNLLNIRIVTNDQSGSAINISFFAKQPELFEYLINQPGIDFDF
AEYKTLQEMVKLIPELHNCKHLIKRKKKIFKEGGFFSFF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029130XLOC_029130Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045554TCONS_00045554Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 20..71
e-value: 2.3E-5
score: 33.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 20..72
score: 10.852
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 20..74
e-value: 0.00498556
score: 33.9584
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 5..89
e-value: 1.1E-11
score: 43.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 170..226
e-value: 1.1E-4
score: 21.9
coord: 137..169
e-value: 0.06
score: 13.0
coord: 90..136
e-value: 1.7E-12
score: 46.8
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 20..71
e-value: 7.9E-5
score: 22.4
NoneNo IPR availableGENE3D1.20.120.330coord: 227..321
e-value: 1.2E-4
score: 21.3
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 14..77
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 35..44
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 93..160

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045554-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top