TCONS_00044874-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00044874-protein
Unique Name	TCONS_00044874-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	226

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00044874-protein ID=TCONS_00044874-protein|Name=TCONS_00044874-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
KYRFSLRRMALYYFLYIILPLVSQVFLFLMVFHIPCENGERMGFGVTILL
SITVYLLVISEKLPEKSDDRPMLGICFIIEFYILSFALVVAAIIVKLSNR
TSTPPHFLLRFCGTSKSICCGAGHQTTTKNHANKKESIEMHEANGYLHSK
DEGTRFLHQRKTQPVAEQQPPVVAQPLEMDEEEINRKLWRKICNSLDRMC
FYGFGFISIFAPVLVVALLDHRMMGV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_028477	XLOC_028477	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00044874	TCONS_00044874	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006029	Neurotrans-gated_channel_TM

Vocabulary: **Biological Process**
Term	Definition
GO:0006811	ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.58.390		coord: 10..223 e-value: 3.4E-26 score: 91.2
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	PFAM	PF02932	Neur_chan_memb	coord: 17..170 e-value: 2.0E-18 score: 67.2
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	SUPERFAMILY	90112	Neurotransmitter-gated ion-channel transmembrane pore	coord: 11..216

Blast

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BLAST of TCONS_00044874-protein vs. Swiss-Prot (Human)
Match: ACHB3 (Neuronal acetylcholine receptor subunit beta-3 OS=Homo sapiens GN=CHRNB3 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.127e-18
Identity = 63/236 (26.69%), Postives = 119/236 (50.42%), Query Frame = 0

Query:    2 YRFSLRRMALYYFLYIILPLVSQVFLFLMVFHIPCENGERMGFGVTILLSITVYLLVISEKLPEKSDDRPMLG--ICFIIEFYILSFALVVAAIIVKLSNRTSTPPH----FLLR-FCGTSKSICCGAGHQTTTKNHANKKESIEMHEANGYLHSKDEGTRFLHQRKTQPVAEQQPPVVAQPLEMDEEEINR---------------KLWRKICNSLDRMCFYGFGFISIFAPVLV 215
            Y F LRR+ L+Y L++I+P +   FL ++VF++P + GE++    ++L+S+TV+LLVI E +P  S   P++G  + FI+ F  LS  ++V   ++ + +R+S+  H    ++ R F      + C        K+H ++  S E  E+   +  K      L ++K + +++ +  +VA  LE   + I                 + W+ +   LDR+  + F  +S+   VL+
Sbjct:  225 YSFVLRRLPLFYTLFLIIPCLGLSFLTVLVFYLPSDEGEKLSLSTSVLVSLTVFLLVIEEIIPSSSKVIPLIGEYLLFIMIFVTLS--IIVTVFVINVHHRSSSTYHPMAPWVKRLFLQKLPKLLC-------MKDHVDRYSSPEKEESQPVVKGK-----VLEKKKQKQLSDGEKVLVAF-LEKAADSIRYISRHVKKEHFISQVVQDWKFVAQVLDRIFLWLFLIVSVTGSVLI 445

The following BLAST results are available for this feature:

BLAST of TCONS_00044874-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00044874-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ACHB3	1.127e-18	26.69	Neuronal acetylcholine receptor subunit beta-3 OS=...	[more]

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TCONS_00044874-protein (polypeptide) - C. hemisphaerica