TCONS_00044437-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00044437-protein
Unique NameTCONS_00044437-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length156

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00044437-protein ID=TCONS_00044437-protein|Name=TCONS_00044437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MAASNPKEYGFDVKFVEKLDRDNIKCAICFMVLREPLQGSTCGHRYCKKC
IEDFHEKNPKKCPQDWQDNEWFKDLGKEREILDLKIRCKNHRDGCTWQNE
LRDQEEHLKTCDFETIQCNLRCGEPVLRKNLQNHLDKDCPLISTCEYSDF
GCLFKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_028069XLOC_028069Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00044437TCONS_00044437Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 26..65
e-value: 7.9E-5
score: 32.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 26..65
score: 10.704
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 25..63
e-value: 3.42961E-6
score: 40.1216
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 13..78
e-value: 8.9E-10
score: 37.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 127..156
e-value: 0.0011
score: 18.6
coord: 79..126
e-value: 8.7E-15
score: 54.2
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 107..154
e-value: 3.1E-11
score: 43.7
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 107..152
score: 10.753
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 25..64
e-value: 3.3E-8
score: 33.1
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 21..67
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 42..51
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 84..153

Blast
[Close]
BLAST of TCONS_00044437-protein vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.924e-28
Identity = 55/134 (41.04%), Postives = 77/134 (57.46%), Query Frame = 0 
Query:   10 GFDVKFVEKLDRDNIKCAICFMVLREPLQGSTCGHRYCKKCIEDFHEKNPKKCPQDWQDNEW---FKDLGKEREILDLKIRCKNHRDGCTWQNELRDQEEHLKTCDFETIQCNLRCGEPVLRKNLQNHLDKDCP 140
            GFD KF+EK  R  + C +C   +REP+Q STCGHR+C  C+++F  +   KCP+D    ++   + D   E ++L L IRC +  +GC W   LR  + HL TC F  I C  RC   + R++L  HL  DCP
Sbjct:    3 GFDYKFLEKPKR-RLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCP 135
The following BLAST results are available for this feature:
BLAST of TCONS_00044437-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF44.924e-2841.04TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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