TCONS_00044266-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00044266-protein
Unique Name	TCONS_00044266-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	253

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00044266-protein ID=TCONS_00044266-protein|Name=TCONS_00044266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
VNGDWGKWGGFNSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSQS
CNTHKCPVNGNWGSWGSYGSCNNKCGGGVQERFRYCNNPAPAHGGKGCPG
YAKMVRACNTHKCPVNGNWGKWGGFNSCNKRCGGGLQTRYRSCNNPTPAH
GGKSCPGSHAHSXYRSCNNPTPAHGGKSCPGSHAHSQSCNTQKCPVNGKW
GSWGSYGSCNNKCGGGVQERFRYCNNPAPAHGGSGCPGYAKMVRACNTHK
CPG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_027903	XLOC_027903	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00044266	TCONS_00044266	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000884	TSP1_rpt

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01705	TSP1REPEAT	coord: 178..189 score: 30.8 coord: 60..73 score: 34.63 coord: 135..146 score: 47.99
IPR000884	Thrombospondin type-1 (TSP1) repeat	SMART	SM00209	TSP1_2	coord: 62..114 e-value: 1.4E-14 score: 64.4 coord: 5..57 e-value: 1.6E-11 score: 54.2 coord: 119..195 e-value: 1.4E-8 score: 44.5 coord: 200..252 e-value: 2.9E-14 score: 63.4
IPR000884	Thrombospondin type-1 (TSP1) repeat	GENE3D	2.20.100.10		coord: 115..164 e-value: 1.2E-13 score: 50.7 coord: 58..113 e-value: 4.6E-17 score: 61.6 coord: 165..194 e-value: 1.6E-5 score: 24.6 coord: 1..56 e-value: 2.7E-16 score: 59.1 coord: 196..251 e-value: 6.8E-17 score: 61.0
IPR000884	Thrombospondin type-1 (TSP1) repeat	PFAM	PF00090	TSP_1	coord: 164..194 e-value: 0.01 score: 16.0 coord: 121..160 e-value: 2.4E-7 score: 30.7 coord: 202..251 e-value: 5.6E-9 score: 36.0 coord: 7..56 e-value: 2.9E-9 score: 36.9 coord: 64..113 e-value: 3.9E-9 score: 36.5
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 197..252 score: 12.716
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 59..114 score: 12.75
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 116..195 score: 11.964
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 2..57 score: 12.902
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 194..251
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 1..53
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 56..113
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 113..168

Blast

[Close]

BLAST of TCONS_00044266-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 7.851e-69
Identity = 114/286 (39.86%), Postives = 153/286 (53.50%), Query Frame = 0

Query:    1 VNGDWGKWGGFNSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSQSCNTHKCPVNGNWGSWGSYGSCNNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFNSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSHAHSX---------------------------------YRSCNNPTPAHGGKSCPGSHAHSQSCNTQKCPVNGKWGSWGSYGSCNNKCGGGVQERFRYCNNPAPAHGGSGCPGYAKMVRACNTHKCPG 253
            V+G W +W  +  C + CG G QTR R+CNNP+  HGG+ C G+      CN   CPV+G W +W  +G+C+  CG G Q R R CNNP PA GG  C G    ++ CN   CP++G W  W  +++C+  CGGG + R R C++P P +GG+ C GS   S                                  YR+C+NP P++GG++C G  +  Q CNT  CPV+G WGSW S+  C+  CGGG + R R C++P P  GG  CPG    V  CN   CPG
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPG 4870

HSP 2 Score: 206.838 bits (525), Expect = 9.181e-61
Identity = 109/285 (38.25%), Postives = 146/285 (51.23%), Query Frame = 0

Query:    1 VNGDWGKWGGFNSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSQSCNTHKCPVNGNWGSWGSYGSCNNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFNSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSH---------------------------------AHSXYRSCNNPTPAHGGKSCPGSHAHSQSCNTQKCPVNGKWGSWGSYGSCNNKCGGGVQERFRYCNNPAPAHGGSGCPGYAKMVRACNTHKCP 252
            V+G + +W  + +C+  CG G+Q R R CN P PA+GGK C GS    ++C    CPV+G+W  W  +  C   CG G Q R R CNNP+  HGG+ C G A  +  CN   CPV+G W  W  + +C++ CG G QTR R CNNP PA GG  C G+                                  A    R C++P P +GG+ C GS   S  CN+  CP +G W  W  +G+C+  C GG   R+R C+NP P++GG  C G    ++ CNT  CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812

The following BLAST results are available for this feature:

BLAST of TCONS_00044266-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00044266-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMCN1	7.851e-69	39.86	Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2	[more]

You are here

TCONS_00044266-protein (polypeptide) - C. hemisphaerica