TCONS_00043726-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043726-protein
Unique NameTCONS_00043726-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043726-protein ID=TCONS_00043726-protein|Name=TCONS_00043726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MEELEALTGRIYLPGDVIITMDKLALISDGNIKFGPGIRPDGKEVLAYKA
GVFRVKEKPFSVWIDTNQKRYVAGRNDTVIGMIISRGGESYKVDIGTSQP
ANLINTDFEGATKRHKPNLKMNDIVFAKLTIANKDMEPEITCKEENVKQS
PLGELKEGYMFNVSLGLCRQLLKMPESKVLSLLGKHFKFEIAVGMNGRVW
INSKGIIDTIAIANAIVSSEFMDDEQISFMVKQLVDSIAGFDQNDD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_027409XLOC_027409Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043726TCONS_00043726Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 158..204
e-value: 1.1E-17
score: 64.0
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 157..238
NoneNo IPR availableGENE3D2.40.50.140coord: 77..157
e-value: 2.3E-22
score: 78.2
NoneNo IPR availableCDDcd05790S1_Rrp40coord: 70..155
e-value: 6.59373E-31
score: 110.042
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 4..69
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 69..161

Blast
[Close]
BLAST of TCONS_00043726-protein vs. Swiss-Prot (Human)
Match: EXOS3 (Exosome complex component RRP40 OS=Homo sapiens GN=EXOSC3 PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 3.276e-51
Identity = 83/214 (38.79%), Postives = 136/214 (63.55%), Query Frame = 0 
Query:   31 NIKFGPGIRPDGKEVLAYKAGVFRVKEKPFS------VWIDTNQKRYVAGRNDTVIGMIISRGGESYKVDIGTSQPANLINTDFEGATKRHKPNLKMNDIVFAKLTIANKDMEPEITCKEENVKQSPLGEL-KEGYMFNVSLGLCRQLLKMPESKVLSLLGKHFKFEIAVGMNGRVWINSKGIIDTIAIANAIVSSEFMDDEQISFMVKQLVDS 237
             +  GPG+R  G  +L  K G  R KE P S       W+D+ QKRYV  + D VIG++ ++ G+ +KVD+G S+PA+L    FEGATKR++PN+++ D+++ +  +ANKDMEPE+ C +   + + +G + ++G +F V+LGL R+LL  P+ +++  +GK +  EI  GMNGR+W+ +K I  T+ +AN + + E M  +Q   +  +L +S
Sbjct:   64 RVVCGPGLRRCGDRLLVTKCGRLRHKE-PGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLA-PDCEIIQEVGKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAES 275
The following BLAST results are available for this feature:
BLAST of TCONS_00043726-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOS33.276e-5138.79Exosome complex component RRP40 OS=Homo sapiens GN... [more]
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