TCONS_00043552-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043552-protein
Unique NameTCONS_00043552-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043552-protein ID=TCONS_00043552-protein|Name=TCONS_00043552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=764bp
MXANETDDEINETLEIYDNAPKTITLKNGMGKMRKRSRPCVIRYHKVSKL
KERNEYFMVLLQLFMPWENENDLKGNCDTFEEKFNEVEEEIKPNILKHDP
YFGRNNDVDLNDIHVYDSSDSESSDDEQDDDYRIIHPDLIDLDYENDAQD
ATNETTSVPFTTSDQNPTISLDRFYNMCFNLNVKQQNFFNFVFKYVLTLK
FSEKMPSIEKPNPFRLFLSGGAGVGKSFLIKCLTEQLKKILKEPGQNIDR
EPSVFVTASTGKAAANVDGTTLHSAFVLPIYDEGRGIMQKRDLTGNALHE
LRLKFKYLKVLLIDEISMIGKRSFDDLNRRLQEIKQIKEPFGEVALLLIG
DFFQLPPIKQNSIYKTKLDYAWEEFKLYELDEIVRQSGDSEFAALLNRLR
EGNHTQADIEKIQSFEHTDTTEWPENFMKMYITNNLKDQQNEKSLKSLQD
WDNKRTSIAKDESRQKVTLNKYVPINKTAGLPKELILCVGARVMLTINKD
VEDKLINGSTGIVKHIQGLRDNKPCGVIYVQFDNPLSGNKLKNARLKGEL
KTCVPVQPEVKTFRTSKNIYVTRKQFPLIVAFATTIHKAQGSTLEYASGD
LDQTTRSGKGLAPVGPGLLYTLLSRATSSDKXFIRELPMHGLAISYDTNQ
VNVIKELNTVSELELLPLLVSINDKYYLIVLIYRPPTSSVPLFAQSLQIE
LDNIRGQINAENFSTIVLGDFNLPDNKEIVNEALPPNIFHQRCEHPTHID
GNILDLIFDDHRET
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_027239XLOC_027239Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043552TCONS_00043552Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR010285DNA_helicase_pif1-like
IPR027417P-loop_NTPase
IPR005135Endo/exonuclease/phosphatase
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0000723telomere maintenance
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000723 telomere maintenance
molecular_function GO:0003678 DNA helicase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 70..90
NoneNo IPR availableGENE3D3.40.50.300coord: 67..468
e-value: 6.0E-18
score: 64.4
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 212..369
e-value: 5.7E-4
score: 29.2
IPR010285DNA helicase Pif1-likePFAMPF05970PIF1coord: 207..411
e-value: 1.2E-28
score: 100.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 337..518
coord: 566..629
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 85..404
IPR005135Endonuclease/exonuclease/phosphataseSUPERFAMILY56219DNase I-likecoord: 637..735

Blast
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BLAST of TCONS_00043552-protein vs. Swiss-Prot (Human)
Match: PIF1 (ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.051e-27
Identity = 118/433 (27.25%), Postives = 187/433 (43.19%), Query Frame = 0 
Query:  216 LFLSGGAGVGKSFLIKCLTEQLKKILKEPGQNIDREPSVFVTASTGKAAANVDGTTLHSAFVLPIYDEGRGIMQKRDLTGNALHE---LRLKFKYLKVLLIDEISMIGKRSFDDLNRRLQEIKQIKEPFGEVALLLIGDFFQLPPIKQNS-----IYKTKLDYAWEEF--KLYELDEIVRQSGDSEFAALLNRLREGNHTQADIEKIQSFEHTDTTEWPENFMKMYITNNLKDQQNEKSL---KSLQDWDNKRTSIAKDESRQKV--TLNKYVPINKTAGLPKELILCVGARVMLTINKDVEDKLINGSTGIVKHIQGLRDNKP-----CGVIYVQFDNPLSGNKLKNARLKGELKTCVPVQPEVKTFRTSKNIYVTRKQFPLIVAFATTIHKAQGSTLEYASGDLDQTTRSGKGLAPVGPGLLYTLLSRATS 628
            +F +G AG GKS+L+K +   L                   TASTG AA ++ GTTLH AF       G G  Q       AL +   +R  +   + L+IDEISM+    FD L    + ++Q  +PFG + L++ GDF QLPP+ + S      +++K   +W+       EL ++ RQ+ D  F +LL  +R G  +     ++Q+                 +   L   Q++ +L   + LQ+   K       +S  ++  TL+   P+++       L L +GA+VML  N  V   L+NG+ G+V   +      P     CGV  V                         +  +  T + +    ++R+Q PL +A+A +IHK+QG TL+     L +   SG+          Y  LSRA S
Sbjct:  224 IFFTGSAGTGKSYLLKRILGSLPPT------------GTVATASTGVAACHIGGTTLH-AFA------GIGSGQAPLAQCVALAQRPGVRQGWLNCQRLVIDEISMVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKGSQPPRFCFQSK---SWKRCVPVTLELTKVWRQA-DQTFISLLQAVRLGRCSDEVTRQLQATASHKVGR------DGIVATRLCTHQDDVALTNERRLQELPGKVHRFEAMDSNPELASTLDAQCPVSQL------LQLKLGAQVMLVKNLSVSRGLVNGARGVVVGFEAEGRGLPQVRFLCGVTEV-------------------------IHADRWTVQATGGQLLSRQQLPLQLAWAMSIHKSQGMTLDCVEISLGRVFASGQA---------YVALSRARS 587
The following BLAST results are available for this feature:
BLAST of TCONS_00043552-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIF11.051e-2727.25ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN... [more]
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