TCONS_00043437-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043437-protein
Unique NameTCONS_00043437-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length106

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043437-protein ID=TCONS_00043437-protein|Name=TCONS_00043437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MIRFVLSGETLLHVACNKRKIHRIKALIEMGAKVNTQDNAGWTPLHEACC
FGNHEVVQELMKSPDIDLTLTRGKKTQCIDGTTALHDAVENNFLNIAEFL
LQKGGR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_027134XLOC_027134Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043437TCONS_00043437Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 80..106
e-value: 24.0
score: 13.8
coord: 40..70
e-value: 0.0014
score: 27.9
coord: 7..36
e-value: 0.094
score: 21.8
IPR002110Ankyrin repeatPFAMPF00023Ankcoord: 80..104
e-value: 0.028
score: 14.8
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 40..62
score: 8.523
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 80..106
score: 10.82
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 7..39
score: 11.995
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 6..106
e-value: 4.7E-25
score: 87.4
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 8..70
e-value: 6.5E-13
score: 49.0
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 7..106
score: 24.612
IPR020683Ankyrin repeat-containing domainSUPERFAMILY48403Ankyrin repeatcoord: 7..104
NoneNo IPR availableCDDcd00204ANKcoord: 8..104
e-value: 5.1168E-22
score: 83.587

Blast
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BLAST of TCONS_00043437-protein vs. Swiss-Prot (Human)
Match: SLF1 (SMC5-SMC6 complex localization factor protein 1 OS=Homo sapiens GN=SLF1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.615e-22
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 0 
Query:    6 LSGETLLHVACNKRKIHRIKALIEM-GAKVNTQDNAGWTPLHEACCFGNHEVVQELM-KSPDIDLTLTRGKKTQCIDGTTALHDAVENNFLNIAEFLLQKGG 105
            L GET LH AC   ++ ++  L+ + G  +N +DNAGWTPLHEAC +GN   VQE++ + P++DL LT+      +DG T LHDA+ N  + I + LLQ GG
Sbjct:  805 LKGETALHRACINNQVEKLILLLSLPGIDINVKDNAGWTPLHEACNYGNTVCVQEILQRCPEVDL-LTQ------VDGVTPLHDALSNGHVEIGKLLLQHGG 899
The following BLAST results are available for this feature:
BLAST of TCONS_00043437-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLF11.615e-2246.08SMC5-SMC6 complex localization factor protein 1 OS... [more]
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