TCONS_00043120-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043120-protein
Unique NameTCONS_00043120-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043120-protein ID=TCONS_00043120-protein|Name=TCONS_00043120-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
SFPKRQQIDNSSFNYPAFPSFRPIQQNRQVNPRQHFNPQQTRPRSNGCFR
CGREGHWSYQCYANLNTQTDKSLILDSSLISTKGRLRQNLEYWEHIGASE
FVLSTIKDGYKIPFLYEPTPCNLKNNKSATIDSEFVSKELLKLLKTGRIK
KLSQKPKFVNPLSVAIRNGKKRLILDLRHINYFVFKQNVKFDDWSIFQNF
IDKNGFLFTFDIKSGYHHVEIFPPHQKYLSFAWNLEGHISFFSFTVLPFG
LTSGPYIFTKLLRPLIGFWRDFGIKIAVFIDDGHSVEKDFESCLKN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026849XLOC_026849Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043120TCONS_00043120Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR000477RT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 47..63
e-value: 0.0057
score: 25.0
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 30..67
e-value: 1.6E-5
score: 24.1
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 48..61
score: 9.735
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 36..64
NoneNo IPR availableGENE3D3.10.10.10coord: 108..244
e-value: 8.7E-17
score: 60.8
NoneNo IPR availableGENE3D3.30.70.270coord: 245..296
e-value: 3.5E-5
score: 23.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..45
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 111..294
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 203..282
e-value: 6.1E-7
score: 29.1

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043120-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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