TCONS_00042766-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00042766-protein
Unique Name	TCONS_00042766-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	465

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00042766-protein ID=TCONS_00042766-protein|Name=TCONS_00042766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MDFPQAIVAIVMLAVCVLLGLPVWWNTTKVYRASLPHSKIEELSQLRWKA
VVSVNLIAEGKDIWYDTIKSEADFDNESFEFTFTQIEARLERSNLDLENM
CGQLDALEGKSTLAVNMLILNSKDEEFSYFCQSGFSYIISATKEQTASSI
LSVLKVMFPIGDVNLSGVKSKTKTSQSLPLSTGYDMVFTLAVGESSASQS
FWDIEDSIKSLLNPFLKKLEFLGPFHVSSQVLYHADVGIEPKFLSGENNN
TFHYYTKQKISLIMNPLESTLNTYTSTDAGINFIIYVPPQKHSPLFIKNA
NSAKNKAFHSPRWGGLQIHNPTSYDSLDIETREHMKIFMNQIQQLNGVDP
ETSTKYFPKNQPSLVAEPILNRLKLSFLLKRLKTSIFTLSSLSKLLDEIA
NIVIRDDIKDLIEIAVDSIEKSIKSLQTGDIEAALSYSKKAYECSEKAFF
DWSLLALLYFPDDQK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_026566	XLOC_026566	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00042766	TCONS_00042766	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019540	PtdIno-glycan_biosynth_class_S

Vocabulary: **Biological Process**
Term	Definition
GO:0016255	attachment of GPI anchor to protein

Vocabulary: **Cellular Component**
Term	Definition
GO:0042765	GPI-anchor transamidase complex

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016255	attachment of GPI anchor to protein
cellular_component	GO:0042765	GPI-anchor transamidase complex

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 90..110
IPR019540	Phosphatidylinositol-glycan biosynthesis class S protein	PFAM	PF10510	PIG-S	coord: 13..465 e-value: 3.8E-86 score: 289.9

Blast

[Close]

BLAST of TCONS_00042766-protein vs. Swiss-Prot (Human)
Match: PIGS (GPI transamidase component PIG-S OS=Homo sapiens GN=PIGS PE=1 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 3.163e-60
Identity = 160/515 (31.07%), Postives = 266/515 (51.65%), Query Frame = 0

Query:    9 AIVMLAVCVLLGLPVWWNTTKVYRASLPHSKIEELSQLRWKAVVSVNLIAEGKDIWYDTIKSEADFDNESFEFTFT-----------QIEARLE---RSNLDLENMC----------GQLDALEGKSTLAVNMLILNSKDEEFSYFCQSGFSYI-------ISATKEQTA-----SSILSVLKVMFPIGDV-------NLSGVKSKTKTSQSLPLSTGYDMVFTLAVGESSASQSFWDIEDSIKSLLNPFLKKLEFLGPFHVSSQVLYHADVGIEPKFLSGENNNTFHYYTKQKISLIMNPLESTL-NTYTSTDAGINFIIYVPPQKHSPLFIKNANSA--KNKAFHSPRWGGLQIHNPTS--YDS------LDIETREHMKIFMNQIQQLNGV-DPETSTKYF---PKNQPSLVAEPILNRLKLSFLLKRLKTSIFTLSSLSKLLDEIANIVIRDDIKDLIEIAVDSIEKSIKSLQTGDIEAALSYSKKAYECSEKAFFDWSLLALLYFPDDQK 465
            A+   AV ++LGLP+WW TT+ YRASLP+S+I  L+ L+ + +V V ++   + +  D        D E   FT             +I+ R +   R  LD E               LD  + ++  ++ + +++   E  S   Q   SYI       +     + A       I+ V + M    DV       +L   K   +  + L  S GY++ F+L   +  +   +WDIE +++  + PFL  L   G F V SQ+LY+A +G+ P+F S  ++   +Y     +  ++NP+ES L ++  S    +NF++YVP   HSPL+I++ + A     AFHSPRWGG+ ++N  S  Y++      ++++    M++F+ Q++ L G+  P+   K     P ++  +  E  L+RL  +  ++ L T+  TL+SL++LL +I+NIVI+DD+   +  AV +++KS + L +G + +A   S++A   SE AFFD SLL LLYFPDDQK
Sbjct:   20 ALFFAAVAIVLGLPLWWKTTETYRASLPYSQISGLNALQLRLMVPVTVVFTRESVPLD--------DQEKLPFTVVHEREIPLKYKMKIKCRFQKAYRRALDHEEEALSSGSVQEAEAMLDEPQEQAEGSLTVYVIS---EHSSLLPQDMMSYIGPKRTAVVRGIMHREAFNIIGRRIVQVAQAMSLTEDVLAAALADHLPEDKWSAEKRRPLKSSLGYEITFSLLNPDPKSHDVYWDIEGAVRRYVQPFLNALGAAGNFSVDSQILYYAMLGVNPRFDSASSS---YYLDMHSLPHVINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYIQDKDGAPVATNAFHSPRWGGIMVYNVDSKTYNASVLPVRVEVDMVRVMEVFLAQLRLLFGIAQPQLPPKCLLSGPTSEGLMTWE--LDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYKAVAAVQKSAEELASGHLASAFVASQEAVTSSELAFFDPSLLHLLYFPDDQK 518

The following BLAST results are available for this feature:

BLAST of TCONS_00042766-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00042766-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PIGS	3.163e-60	31.07	GPI transamidase component PIG-S OS=Homo sapiens G...	[more]

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TCONS_00042766-protein (polypeptide) - C. hemisphaerica