TCONS_00042536-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00042536-protein
Unique NameTCONS_00042536-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length187

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00042536-protein ID=TCONS_00042536-protein|Name=TCONS_00042536-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
LVDGGWSSWSGFSSCTLSCGSGTQYRTRACDNPARQYGGKHCQGDEREER
ACNTNPCPVDGGWSSWSGFSSCTLSCGTGTQYRTRACDNPASQYGGKHCE
GDGREEKSCNTNPCPGCRSGWTQRDHECFMYIPTQRTWSDAESDCVVKGG
HLVTVYNGDRKQFIIDTFLKASNAEIWIGMNDRDTEG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026359XLOC_026359Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00042536TCONS_00042536Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR016187CTDL_fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 4..17
score: 43.37
coord: 41..52
score: 36.83
coord: 22..33
score: 47.02
NoneNo IPR availableCDDcd00037CLECTcoord: 128..187
e-value: 3.07874E-12
score: 58.7853
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 63..115
e-value: 5.4E-15
score: 65.8
coord: 6..58
e-value: 9.3E-16
score: 68.4
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 59..105
e-value: 5.1E-17
score: 61.4
coord: 2..57
e-value: 9.8E-18
score: 63.7
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 64..114
e-value: 1.7E-10
score: 40.8
coord: 7..57
e-value: 8.5E-12
score: 45.0
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 60..115
score: 13.724
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 3..58
score: 14.027
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 2..57
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 56..114
IPR001304C-type lectin-likePFAMPF00059Lectin_Ccoord: 135..186
e-value: 2.3E-7
score: 31.4
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 124..187
score: 10.701
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 106..187
e-value: 4.9E-19
score: 68.1
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 109..187

Blast
[Close]
BLAST of TCONS_00042536-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 6.270e-36
Identity = 62/122 (50.82%), Postives = 77/122 (63.11%), Query Frame = 0 
Query:    2 VDGGWSSWSGFSSCTLSCGSGTQYRTRACDNPARQYGGKHCQGDEREERACNTNPCPVDGGWSSWSGFSSCTLSCGTGTQYRTRACDNPASQYGGKHCEGDGREEKSCNTNPCP--GCRSGW 121
            V GG+S WS + +C+++CG G Q R+R C+ P    GGK CQG + E R C   PCPVDG WS WS +  CT SCG G Q RTR C+NP+ Q+GG+ CEG+  E   CN  PCP  G  S W
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAW 4649

HSP 2 Score: 125.176 bits (313), Expect = 1.906e-33
Identity = 56/114 (49.12%), Postives = 73/114 (64.04%), Query Frame = 0 
Query:    2 VDGGWSSWSGFSSCTLSCGSGTQYRTRACDNPARQYGGKHCQGDEREERACNTNPCPVDGGWSSWSGFSSCTLSCGTGTQYRTRACDNPASQYGGKHCEGDGREEKSCNTNPCP 115
            VDG WS WS +  CT SCG G Q RTR C+NP+ Q+GG+ C+G+  E   CN  PCPV G WS+W  + +C+ SCG GTQ R R C+NP   +GG +C+G   + + CN   CP
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP 4698

HSP 3 Score: 124.02 bits (310), Expect = 5.897e-33
Identity = 52/114 (45.61%), Postives = 75/114 (65.79%), Query Frame = 0 
Query:    2 VDGGWSSWSGFSSCTLSCGSGTQYRTRACDNPARQYGGKHCQGDEREERACNTNPCPVDGGWSSWSGFSSCTLSCGTGTQYRTRACDNPASQYGGKHCEGDGREEKSCNTNPCP 115
            V G WS+W  + +C+ SCG GTQ R R C+NP   +GG +C G E + + CN   CP+ G W++W+ +S+C++SCG G + RTR C +P  QYGG+ CEG   +   CN++PCP
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755

HSP 4 Score: 114.39 bits (285), Expect = 1.291e-29
Identity = 49/114 (42.98%), Postives = 73/114 (64.04%), Query Frame = 0 
Query:    2 VDGGWSSWSGFSSCTLSCGSGTQYRTRACDNPARQYGGKHCQGDEREERACNTNPCPVDGGWSSWSGFSSCTLSCGTGTQYRTRACDNPASQYGGKHCEGDGREEKSCNTNPCP 115
            + G W++W+ +S+C++SCG G + RTR C +P  QYGG+ C+G + +   CN++PCP  G WS WSG+ +C+ +C  G   R R CDNP    GG+ C G   + + CNT+ CP
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812

HSP 5 Score: 109.383 bits (272), Expect = 7.487e-28
Identity = 51/113 (45.13%), Postives = 66/113 (58.41%), Query Frame = 0 
Query:    4 GGWSSWSGFSSCTLSCGSGTQYRTRACDNPARQYGGKHCQGDEREERACNTNPCPVDGGWSSWSGFSSCTLSCGTGTQYRTRACDNPASQYGGKHCEGDGREEKSCNTNPCPG 116
            G WS WSG+ +C+ +C  G   R R CDNP    GG+ C G + + + CNT+ CPVDG W SW  +S C+ SCG G + R R CD+P    GG+ C GD  +   CN   CPG
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPG 4870
The following BLAST results are available for this feature:
BLAST of TCONS_00042536-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN16.270e-3650.82Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
back to top