TCONS_00042054-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00042054-protein
Unique NameTCONS_00042054-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00042054-protein ID=TCONS_00042054-protein|Name=TCONS_00042054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
XPTNGGRMNERRGESNGRSVECYNCHKLGHFSRECPEPRRERGSLRTLTT
NDETTPLEADQGIQSSNKNQLRISIPFIANEKLSVLNLNVNFGGASVSAL
VDTGATASCISEDFGKTLPKENKFVTDVPTHLSLATDKSVTTNLKAIFEL
GLGPGDHSTKMEFLIVKGLSCPIILGNDFLRRYGAIINYDLNSLEISKHA
KNDDEQELKISKITFESNPAMTPKKQKTVNHEDYVEDQVKNVNVPEDMKN
NFRRFLFKYSSVFCHDPDSLTPANVEPFEIKLKDKTPIQLRAYKASPKVK
RVIEDHIDNLLRTGVIEPSRSDFSSPVVITPKKGGTFRFCVDYRKLNKQI
VTEAYPLPLIEDNLADFNGSLFFTILDMRSGYHQVPLEKNSRACTAFICH
IGSFQFRTTPFGLVHAPAGFQRRIMKAFGQPLPEFVKIYLDDIVVKSKSA
HEHLTHLEHVFDVLAYKKLQIKPTKCEFFRTSITYLGHVVSRKGIETDSD
KVKAIRDFPTPTSTKQVRSFVGLATYYKKFIINFSNITRPLHALTGANVR
FVWNEAA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_025939XLOC_025939Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00042054TCONS_00042054Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR021109Peptidase_aspartic_dom
IPR000477RT_dom
IPR001969Aspartic_peptidase_AS
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0004190aspartic-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 21..37
e-value: 1.6E-4
score: 31.0
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 21..37
e-value: 9.3E-6
score: 25.4
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 2..50
e-value: 6.1E-11
score: 41.9
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 22..37
score: 10.394
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 4..44
NoneNo IPR availableGENE3D3.10.10.10coord: 278..411
e-value: 1.7E-40
score: 137.6
NoneNo IPR availableGENE3D3.30.70.270coord: 491..557
e-value: 7.4E-25
score: 86.7
NoneNo IPR availablePFAMPF13975gag-asp_proteascoord: 89..182
e-value: 4.9E-8
score: 33.3
NoneNo IPR availableGENE3D3.30.70.270coord: 412..490
e-value: 3.4E-25
score: 87.6
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 88..181
e-value: 7.14964E-17
score: 75.4508
NoneNo IPR availableCDDcd01647RT_LTRcoord: 314..490
e-value: 2.94648E-77
score: 242.886
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 256..556
IPR021109Aspartic peptidase domainGENE3D2.40.70.10coord: 78..196
e-value: 4.9E-18
score: 65.1
IPR021109Aspartic peptidase domainSUPERFAMILY50630Acid proteasescoord: 87..188
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 331..489
e-value: 8.2E-25
score: 87.5
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 311..490
score: 12.217
IPR001969Aspartic peptidase, active sitePROSITEPS00141ASP_PROTEASEcoord: 99..110

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042054-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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