TCONS_00040676-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00040676-protein
Unique NameTCONS_00040676-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length232

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00040676-protein ID=TCONS_00040676-protein|Name=TCONS_00040676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
QENKDSKKKTINMKSEIDEFFNEMERDKNYMNSVTLNIGPEDANFDLFGE
EKHEFVDTNINYDISMKIKIEEDNNSLAPVEEVSDSQHQPDSFDIKIELD
EIILPTNLTTDATNLQAENAEIRERKNNLATKRSKRNFICKECGKAFKFN
CDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSDIESFKCKECG
KAFKFNCDLKRHFRIHTGERPFKCQDCGKXVV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_024782XLOC_024782Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00040676TCONS_00040676Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 112..132
NoneNo IPR availableGENE3D3.30.160.60coord: 151..174
e-value: 4.3E-19
score: 68.1
NoneNo IPR availableGENE3D2.20.28.10coord: 175..193
e-value: 1.0E-12
score: 47.3
NoneNo IPR availableGENE3D3.30.160.60coord: 218..231
e-value: 4.3E-7
score: 29.3
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 166..188
e-value: 4.2E-7
score: 30.0
coord: 194..216
e-value: 1.6E-4
score: 21.8
coord: 138..160
e-value: 3.0E-4
score: 21.0
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 138..160
e-value: 0.019
score: 24.1
coord: 166..188
e-value: 3.5E-4
score: 29.9
coord: 194..216
e-value: 0.012
score: 24.8
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 196..216
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 140..160
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 168..188
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 194..221
score: 17.371
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 166..193
score: 13.713
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 138..165
score: 16.934
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 175..229
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 136..188
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 194..217
e-value: 2.8E-17
score: 62.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 4..150
e-value: 1.9E-11
score: 43.6

Blast
[Close]
BLAST of TCONS_00040676-protein vs. Swiss-Prot (Human)
Match: ZKSC4 (Zinc finger protein with KRAB and SCAN domains 4 OS=Homo sapiens GN=ZKSCAN4 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.460e-33
Identity = 72/205 (35.12%), Postives = 115/205 (56.10%), Query Frame = 0 
Query:   31 MNSVTLNIGPEDANFD-----LFGEEKHEFVDTNINYDISMKIKIEEDNNSLAPVEEVSDSQHQPDSFDIKI-ELDEIILPTNLTTDATNLQAENAEIRERKNNLATKRSKRNFICKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSDIESFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGK 229
            M  V L + P     D     L+ +EK E    N +  +S+  +I+  +  L PV+++ + +H       KI  L E I    + T A   + E    R++KN + ++R      C ECGK+F  +  L +H RIHTGE+P++C+DCGK F   S+L +H ++H+  + ++C+ECGK F  + +L +H R HTGE+P++C DCGK
Sbjct:  223 MEDVALTLTPGWTQLDSSQVNLYRDEKQE----NHSSLVSLGGEIQTKSRDLPPVKKLPEKEHG------KICHLREDI--AQIPTHAEAGEQEGRLQRKQKNAIGSRR----HYCHECGKSFAQSSGLTKHRRIHTGEKPYECEDCGKTFIGSSALVIHQRVHTGEKPYECEECGKVFSHSSNLIKHQRTHTGEKPYECDDCGK 411

HSP 2 Score: 90.1225 bits (222), Expect = 8.764e-21
Identity = 46/126 (36.51%), Postives = 63/126 (50.00%), Query Frame = 0 
Query:  131 TKRSKRNFICKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSD---------------------------IESFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGK 229
            T   ++ + C +CGK F  +C L  H +IHTGE+P++C  CGK F R S L  H +IH D                             S+KC EC ++F  N  L  H +IHTGE+P++C  CGK
Sbjct:  397 THTGEKPYECDDCGKTFSQSCSLLEHHKIHTGEKPYQCNMCGKAFRRNSHLLRHQRIHGDKNVQNPEHGESWESQGRTESQWENTEAPVSYKCNECERSFTRNRSLIEHQKIHTGEKPYQCDTCGK 522

HSP 3 Score: 89.3521 bits (220), Expect = 1.763e-20
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = 0 
Query:  134 SKRNFICKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSDIESFKCKECGKAFKFNCDLKRHFRIH 216
             ++ + C+ECGK F  + +L +H R HTGE+P++C DCGK F++  SL  H KIH+  + ++C  CGKAF+ N  L RH RIH
Sbjct:  372 GEKPYECEECGKVFSHSSNLIKHQRTHTGEKPYECDDCGKTFSQSCSLLEHHKIHTGEKPYQCNMCGKAFRRNSHLLRHQRIH 454
The following BLAST results are available for this feature:
BLAST of TCONS_00040676-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZKSC41.460e-3335.12Zinc finger protein with KRAB and SCAN domains 4 O... [more]
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