TCONS_00040194-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00040194-protein
Unique Name	TCONS_00040194-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	571

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00040194-protein ID=TCONS_00040194-protein|Name=TCONS_00040194-protein|organism=Clytia hemisphaerica|type=polypeptide|length=571bp
MELVKAVNDCLKVNGYVIKKQQLTAISYIYQGFDTLCILPTNFGKSLIYQ
VIPSVFKKLEGQPPNPIVVCLSPLISLIKDQVTSANNSGYGLNAIQLDTT
KYDEIASGKFNLILGSPENWLNKKWKNMLSTKIFRENLVCIVVDEVHKVT
WGAASSTSDKPFREAYSQISSFRSIGREKVPILALSATIDGDLTKLVVNS
CSLSNRFRTVSSYVDRRNVRLSVVKIKRKDLNSLTWLLSDLIESYNGNIP
FPRSIIFCRSLQLAGWVYVKIFKILKQSIPEDLSKLALGLFHSMTPENNK
KRILDALTSDDDNPLKIVIATSSLGCGVNMKNITYVIHFGPAYDLVDYCQ
QVGRAGRGNMESLCHGILYSYSDGRTQISEKMKSYINSEQCLRRFLYAPF
NNNEITIESVVPAHKCCIVCAVKCKCGSCELFSFEKVKLLASEEIQLEPF
REVPDYMRMLVKNVLLEYRALNLNRTMFLNVEFTSGLSDEAIDEILDHLP
FINSLSYIDENIAIVDTRVQYEVLEIIYESFEDFEMTPCLFDSVNNRENI
EKVVFTSDSDITISDHSENED

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_024392	XLOC_024392	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00040194	TCONS_00040194	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR014001	Helicase_ATP-bd
IPR011545	DEAD/DEAH_box_helicase_dom
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 273..359 e-value: 3.1E-13 score: 60.0
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 252..359 e-value: 1.4E-13 score: 51.1
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 233..406 score: 12.715
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 14..220 e-value: 2.0E-14 score: 63.9
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 26..207 score: 15.187
None	No IPR available	GENE3D	3.40.50.300		coord: 216..430 e-value: 2.1E-20 score: 72.5
None	No IPR available	GENE3D	3.40.50.300		coord: 1..212 e-value: 4.7E-14 score: 51.7
None	No IPR available	CDD	cd00079	HELICc	coord: 218..364 e-value: 3.84516E-12 score: 62.6404
None	No IPR available	CDD	cd00046	DEXDc	coord: 34..189 e-value: 5.78395E-10 score: 56.1916
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 21..195 e-value: 1.9E-10 score: 40.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 27..365

Blast

[Close]

BLAST of TCONS_00040194-protein vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 6.834e-30
Identity = 117/420 (27.86%), Postives = 200/420 (47.62%), Query Frame = 0

Query:   27 SYIYQGFDTLCILPTNFGKSLIYQVIPSVFKKLEGQPPNPIVVCLSPLISLIKDQVTS---ANNSGYGLNAIQLDTTKYDEIASGKFNLILGSPENWL-NKKWKNMLSTKIFRENLVCIVVDEVHKVT-WGAASSTSDKPFREAYSQISSFRSIGREKVPILALSATIDGDLTKLVVNSCSLSNRFRTVSSYVDRRNVRLSVVKIKRKDLNSLTWLLSDLIE-SYNGNIPFPRSIIFCRSLQLAGWVYVKIFKILKQSIPEDLSKLALGLFHSMTPENNKKRILDALTSDDDNPLKIVIATSSLGCGVNMKNITYVIHFGPAYDLVDYCQQVGRAGRGNMESLCHGILYSYSD---GRTQISE---------------KMKSYINSEQCLRRFLYAPFNNNEITIES--VVPAHKCCIVC 420
            S + +  D + ++ T +GKSL +Q  P    K        I + +SPLISL++DQV     +N     L + Q +    D I  GK+ ++  +PE    N      L   I    +  I VDE H ++ WG         FR+++ ++ S ++     VPI+AL+AT    + + +V   +L N   T + + DR N+ L V   +RK  N L  L   L++ S +     P +II+C S ++   V  ++ K+           L+ G +H+    + +K I      D+   ++ VIAT + G G+N  +I  VIH+G   D+  Y Q++GRAGR  ++S CH +L++ +D    R  ++E               KM+ Y++S +C R+ + + F + ++   S  ++   KCC  C
Sbjct:  559 SVLEERRDNVAVMATGYGKSLCFQYPPVYVGK--------IGLVISPLISLMEDQVLQLKMSNIPACFLGSAQSENVLTD-IKLGKYRIVYVTPEYCSGNMGLLQQLEADI---GITLIAVDEAHCISEWG-------HDFRDSFRKLGSLKT-ALPMVPIVALTATASSSIREDIVRCLNLRNPQITCTGF-DRPNLYLEV---RRKTGNILQDLQPFLVKTSSHWEFEGP-TIIYCPSRKMTQQVTGELRKL----------NLSCGTYHAGMSFSTRKDIHHRFVRDE---IQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCH-VLWAPADINLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNC 939

The following BLAST results are available for this feature:

BLAST of TCONS_00040194-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00040194-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WRN	6.834e-30	27.86	Werner syndrome ATP-dependent helicase OS=Homo sap...	[more]

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TCONS_00040194-protein (polypeptide) - C. hemisphaerica