TCONS_00038990-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00038990-protein
Unique NameTCONS_00038990-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length290

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00038990-protein ID=TCONS_00038990-protein|Name=TCONS_00038990-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MASTSTKEVKKHHKKLNVCYKRPGYRESRWEKAVKVYTINQESKYVIVVG
VPAVGATKELLQQFALYGDIEEYRHLDEYPVEEFTEAYWIKYKRIQSSRH
GKKKMDNRSFFGGLLHVFYAPEYESVDDTRCKLMERKRSALRKCQEYFGE
DDGSSKKSNQQQEQSPSTETHSTPRTTTSTSRLAPLYEPPSDHLVSQRPS
PLNYAIPKPPVHNHKEKINNFTTPDIDQRGGHETRLPEFPRVPTKQSNWD
NFPLISSVEYVVLLRNREVRRNRTRYRSRIEYMLLLLRVG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_023447XLOC_023447Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00038990TCONS_00038990Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034264RBM48_RRM
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.330coord: 38..177
e-value: 9.5E-5
score: 21.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..214
IPR034264RBM48, RNA recognition motifCDDcd12442RRM_RBM48coord: 34..133
e-value: 9.02384E-58
score: 181.722
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 42..122

Blast
[Close]
BLAST of TCONS_00038990-protein vs. Swiss-Prot (Human)
Match: RBM48 (RNA-binding protein 48 OS=Homo sapiens GN=RBM48 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.302e-48
Identity = 77/126 (61.11%), Postives = 97/126 (76.98%), Query Frame = 0 
Query:   12 HHKKLNVCYKRPGYRESRWEKAVKVYTINQESKYVIVVGVPAVGATKELLQQFALYGDIEEYRHLDEYPVEEFTEAYWIKYKRIQSSRHGKKKMDNRSFFGGLLHVFYAPEYESVDDTRCKLMERK 137
            HH +  VC  R  YRE R  +AVKVYTIN ES+Y+++ GVPAVG  KEL+++FALYG IE+Y  LDEYP E+FTE Y IK+  +QS+R  K+KMD +SFFGGLLHV YAPE+E+V++TR KL  RK
Sbjct:   14 HHVQRAVCDTRAKYREGRRPRAVKVYTINLESQYLLIQGVPAVGVMKELVERFALYGAIEQYNALDEYPAEDFTEVYLIKFMNLQSARTAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQMRK 139
The following BLAST results are available for this feature:
BLAST of TCONS_00038990-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM481.302e-4861.11RNA-binding protein 48 OS=Homo sapiens GN=RBM48 PE... [more]
back to top