TCONS_00038530-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00038530-protein
Unique NameTCONS_00038530-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00038530-protein ID=TCONS_00038530-protein|Name=TCONS_00038530-protein|organism=Clytia hemisphaerica|type=polypeptide|length=569bp
YXINGNGILITNTNPFIKIDIKIRKCRQSSCKAVHAPYLYEKGLFNVSNK
VVVGLDILLEWREFFKDGMPVSNFIRCKLKALEKKTEKEHCLTSEEIEYL
VKTLYNGFYAFEALTERNLDESICGICGIVGIVYYGDGNEKNCCTNKEIN
CSAKKETLLSSNKEETRLSSTKEDNELSSNKKETGQSSNKEETQLRNDNE
VNLEETLLSMKDRLVRKMLFPNAAEENRFEIDLDNIPPIIPPKQRSHQFS
TEMSKKSEYLKKSDVIEGDAMKLSRLITDEKLSIEDFDSMDVKELKRIAS
KCDIKQSGKSRALLKVVLQQLYASILVGRSACHQFVKSAGHTGGFYHFVC
PHGTTVCSKLMILTESVRDAADLWLSLKYPPVMFICDTPCTFVQHVNKRK
PDLAKKYWDDFDGCFEKPTLDKDPNSEMDVPNIVPIEFRDVAPIPMNPKN
SNVHPITYKERRYVAGDRFHTGTNPHKSPLCEYHNVNLAQQGNTLKTSYQ
ESMNNKKNKLRNRTSCTQGFLHHFYYNYLMNFYENEEIVSKQRRNLENMV
SNTGKIVKRDEYSRFVVAE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_023113XLOC_023113Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00038530TCONS_00038530Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.720.10coord: 280..313
e-value: 0.003
score: 16.9

Blast
[Close]
BLAST of TCONS_00038530-protein vs. Swiss-Prot (Human)
Match: HMGX3 (HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.200e-47
Identity = 146/557 (26.21%), Postives = 243/557 (43.63%), Query Frame = 0 
Query:   19 IDIKIRKCRQSSCKAVHAPYLYEKGLFNVSNKVVVGLDILLEWREFFKDGMPVSNFIRCKLKALEKKTEKEHCLTSEEIEYLVKTLYNGFYAFEALTERNLDESICGICGIVGIVYYGDGNEKNCCTNKEINCSAKKETLLSSNKEETRLSSTKEDNELSSNKKETGQSSNKEETQLRNDNEVNLEETLLSMKDRLVRKMLFPNAAEENRFEIDLDNIPPIIPPKQRSHQFSTEMSKKSEYLKKSDV--IEGDAMKLSRLITDEKLSIEDFDSMDVKELKRIASKCDIKQSGK-SRALLKVVLQQLYASILVGRSACHQFVKSAGH-TGGFYHFVCPHGTTVCSKLMILTESVRDAADLWLSLKYPPVMFICDTPCTFVQHVNKRKPDLAKKYWDDFDGCFEKPTLDKDPNSEMDVPNIVPIEFRDVAPIPMNPKNSNV-HPITYKERRYVAGDRFHTGTNPHKS-PLCEYHNVNLAQQGNTLKTSYQESMNNKKNKLRNRTSCTQGFLHHFYYNYLMNFYENEEIVSKQRRNLENMVSNTGKIVKRDEYSRFVVAE 569
            +  +++ C    C A+H+      GLFNV NK++V LD+L   R   K G      I   LK+++++TEK   LTSEE+  L + L NG++AFE LT R+ ++ ICGICG+   V     +E+N    K +  +                                         +    NEVN+E+   +M+  ++ ++ FP +    +F  D   I P  PP  R       +   +E  K  DV  + G    L RL+ +    +++  S   ++L+ +  +C I    + S+  L   L  LY S+  G  A    ++   H TGG  + VCPH     SK ++  ES RD  DL  S ++ P +++ D   +     +   P+L  + W    GCF  PT   +P   +  P ++   +     + M     ++ HP+T    R +     H G  P+   P   +H++ L  +     T     +++K N +R R        H++ YN LM+F  + EIV++Q  ++       G++V RD   R  VA+
Sbjct: 1027 VTAQVKMCLNPHCLALHSFIDIYTGLFNVGNKLLVSLDLLFAIRNQIKLGEDPRVSINVVLKSVQEQTEKT--LTSEELSQLQELLCNGYWAFECLTVRDYNDMICGICGVAPKVEMAQRSEENVLALKSVEFTWP---------------------------------------EFLGSNEVNVEDFWATMETEVIEQVAFPASIPITKF--DASVIAPFFPPLMRG-----AVVVNTEKDKNLDVQPVPGSGSALVRLLQEGTCKLDEIGSYSEEKLQHLLRQCGIPFGAEDSKDQLCFSLLALYESVQNGARA----IRPPRHFTGGKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPVYVVDMATSVALCADLCYPELTNQMWGRNQGCFSSPT---EPPVSVSCPELLDQHYT----VDMTETEHSIQHPVTKTATRRI----VHAGLQPNPGDPSAGHHSLALCPELAPYATILASIVDSKPNGVRQRPIAFDNATHYYLYNRLMDFLTSREIVNRQIHDIVQSC-QPGEVVIRDTLYRLGVAQ 1519
The following BLAST results are available for this feature:
BLAST of TCONS_00038530-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMGX31.200e-4726.21HMG domain-containing protein 3 OS=Homo sapiens GN... [more]
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