TCONS_00037199-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00037199-protein
Unique NameTCONS_00037199-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00037199-protein ID=TCONS_00037199-protein|Name=TCONS_00037199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
NIIGFLKQASNTKRKRQSTITSFLAPGQNQVDDSVVYLRSKAAAPPPSKK
RVGRPPNSLTDDQINRMLERNHDYNDLLRKATYFDSVIINFYLNPDSVKN
ANEIEHSTRKRYTEKTKREMREHYLLTQNFVASAKAFNVNESTLRNIVKT
LPRNVKPIDKGNRSGAGRPLTYPLEVENDLVCWILKLRDMHFPVSVLALQ
EKGRSVICPHNPTFNASRGWVQKFFARHRLSLRSRTSVSQKLPQQLESSI
TKFYLDAGRYMRIGKYPLSLVGNMDETPAFFDMVPAKSITKTGTKECVVR
TS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_022007XLOC_022007Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00037199TCONS_00037199Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006600HTH_CenpB_DNA-bd_dom
IPR011991WHTH_DNA-bd_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006600HTH CenpB-type DNA-binding domainSMARTSM00674cenpbcoord: 169..234
e-value: 0.0089
score: 25.2
IPR006600HTH CenpB-type DNA-binding domainPFAMPF03221HTH_Tnp_Tc5coord: 175..233
e-value: 5.1E-10
score: 39.2
IPR006600HTH CenpB-type DNA-binding domainPROSITEPS51253HTH_CENPBcoord: 164..234
score: 11.986
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 90..166
e-value: 2.2E-5
score: 23.8
NoneNo IPR availableGENE3D1.10.10.60coord: 171..229
e-value: 6.2E-9
score: 35.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..61
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 175..228

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037199-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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