TCONS_00036652-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00036652-protein
Unique NameTCONS_00036652-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00036652-protein ID=TCONS_00036652-protein|Name=TCONS_00036652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MAACKPEEYGFDVTFIWEDEKSEVSQATEENSVQNAKEINRDDITCAICL
LVLREPVQAVKCGHRFCEKCIGEFHLQNPGKCPKDWQEIQVFPDVGKKRE
ILSLKIRCPNFVDGCTWQNELREKEVHLKTCGFVTVPCELDCGEFVLRKN
ITNHVDTVCPMVSSCEYKDSGCYFKGTKLQLDNHMAQSANMHLSFEMKSG
IFKMKKEFDQKLTAKDFEAQQMENEFTEQLKMRDNEIGKVRVKLDGDLKV
KDKMIQALAERLKIAEEKLKGVDEMEIKVQMNQTAIKSLEKKLLTKLKTT
DESLFDLKEEFMLTKQEVEKVKERHQKDDLFKAPARGFAVKEELNSTICP
PSLCNYTWTIEKFKENFDAPKWSFYNSPMFFTKHGYKGCISSRFPLTIQD
NKNTYVSVFFRNEVSPHDETLEWPMPWKSLTFTLIFNGVEIAQTVIRSTD
EGGRWKDSFKRPLRDISSSVGNQSAFEHVLLNITTNDSVAIRFVMN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_021635XLOC_021635Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00036652TCONS_00036652Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR008974TRAF-like
IPR001293Znf_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 248..292
NoneNo IPR availableCOILSCoilCoilcoord: 304..324
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 46..83
e-value: 2.9E-9
score: 36.5
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 33..92
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 46..85
e-value: 9.7E-5
score: 31.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 46..85
score: 10.866
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 45..83
e-value: 1.02922E-8
score: 50.522
IPR008974TRAF-likeGENE3D2.60.210.10coord: 356..496
e-value: 6.7E-10
score: 39.2
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 356..492
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 103..181
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 127..184
e-value: 7.3E-11
score: 42.5
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 126..172
score: 10.577
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 104..147
e-value: 5.9E-13
score: 48.3
coord: 148..185
e-value: 5.7E-5
score: 22.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 16..103
e-value: 5.0E-12
score: 45.0
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 62..71

Blast
[Close]
BLAST of TCONS_00036652-protein vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.361e-26
Identity = 118/479 (24.63%), Postives = 199/479 (41.54%), Query Frame = 0 
Query:   44 ITCAICLLVLREPVQAVKCGHRFCEKCIGEFHLQNPGKCPKDWQEI---QVFPDVGKKREILSLKIRCPNFVDGCTWQNELREKEVHLKTCGFVTVPCELDCGEFVLRKNITNHVDTVCPMVS-SCEYKDSGCYFKGTKLQLDNHMAQSANMHLSFEMKSGIFKMKKEFDQKLTAKDFEAQQ----MENEFT-EQLKMRDNEIGKVRVKLDGDLKVKDKMIQALAERLK--------IAEEKLKGVDEMEIKVQMNQTAIKSLEKKLLTKLKTTDESLFDLKEEFMLTKQEVEKVKERHQKDDLFKAPARGFAVKEELNSTICPPSLCNYTWTIEKFKENFDAPKWSFYNSPMFFT-KHGYKGCISSRFPLTIQDNKNTYVSVFFRNEVSPHDETLEWPMPWKSLTFTLIFN---GVEIAQTVIRSTDEGGRWKDSFKRP------LRDISSSVGNQSAFEHVLL---NITTNDSVAIR 492
            + C +C   +REPVQ   CGHRFC+ C+ EF  +   KCP+D   +   +++PD   + ++L L IRC +  +GC W   LR  + HL TC F  +PC   C   + R+++  H+   CP     CE+   GC F G   +    M    +++   E K G   M++   Q  T++  +  Q       EF  + ++    +  ++ V       V     + L   LK        +   K  G      K+ M +   +S++  L            +L+E     ++E+E++        ++K  + G  ++E                   K K N +        SP F+T K+GYK  +S+ F       + T++S++ R      D  LEWP   + +TF+L+     G+   Q V  +      WK+ F++P      L + S   G      H  +   N   +D+V IR
Sbjct:   16 LLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEF--CGCDFSGEAYESHEGMCPQESVYC--ENKCGARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQELQE----LRRELEELSVGSDGVLIWKIGSYGRRLQE------------------AKAKPNLEC------FSPAFYTHKYGYKLQVSA-FLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPF-ARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKN-FQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIR 459
The following BLAST results are available for this feature:
BLAST of TCONS_00036652-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF42.361e-2624.63TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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