TCONS_00035456-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00035456-protein
Unique Name	TCONS_00035456-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	475

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00035456-protein ID=TCONS_00035456-protein|Name=TCONS_00035456-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
MLNFQDIAQITVEAIHENKEDVGIIDHSSKKKPKTEEELRKEKVKEHVSD
LIDNSSLHGLSYIFDKRHPIRRVIWFFITTSAFIYSMLKVYESTEYYLSY
PFTTARMRQYVDSIEFPAVSFCNINDMRISILNGTNVDIAILTNNPGNVT
AEEYRSTTRSAAHDITEMLVDCNFNGMKCTAKNFTEFFWKQGDRCFTFNS
GKQGPVLKVTGTGVERSLTLTINLQHFDYYRDSMVSGIHMILHGQDETPV
KIRGPMISPGYTSFIKVEKKKILNLKSPYKTNCGELDLKYFNGYSMHTCW
LEKLTDYVVKHCNCKDFFMPGNHSICDLGTAYTCMWPKWEEYDKNKLANC
PLPCEIDSFHSETISRALFPSEQYAHKLKKILEKEPHMKNVVIKNVKQFM
RDNLLRVVIYYDDMSYERVEQQPSYDTLEWLGDVGGQIGLFIGAGAMSYF
EFVDCIALVIYARFFQSFKPAPPNV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_020727	XLOC_020727	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00035456	TCONS_00035456	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001873	ENaC

Vocabulary: **Biological Process**
Term	Definition
GO:0006814	sodium ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005272	sodium channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006814	sodium ion transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005272	sodium channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001873	Epithelial sodium channel	PRINTS	PR01078	AMINACHANNEL	coord: 112..128 score: 40.94 coord: 435..451 score: 39.76 coord: 305..322 score: 24.89 coord: 401..421 score: 22.67 coord: 421..435 score: 23.2
IPR001873	Epithelial sodium channel	PFAM	PF00858	ASC	coord: 53..454 e-value: 1.5E-77 score: 261.3
None	No IPR available	GENE3D	1.10.287.770		coord: 409..463 e-value: 3.1E-18 score: 65.0
None	No IPR available	GENE3D	2.60.470.10		coord: 102..324 e-value: 3.1E-41 score: 141.1 coord: 347..408 e-value: 7.5E-6 score: 25.2

Blast

[Close]

BLAST of TCONS_00035456-protein vs. Swiss-Prot (Human)
Match: ASIC1 (Acid-sensing ion channel 1 OS=Homo sapiens GN=ASIC1 PE=1 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 1.118e-57
Identity = 134/467 (28.69%), Postives = 227/467 (48.61%), Query Frame = 0

Query:   34 KTEEELRKEKVKEHVSDLIDNSSLHGLSYIFD-KRHPIRRVIWFFITTSAFIYSMLKVYESTEYYLSYPFTTARMRQYVDSIEFPAVSFCNINDMRISILNGTNV----DIAILTNN----PGNVTAEEY-------RSTTRS--------------AAHDITEMLVDCNFNGMKCTAKNFTEFFWKQGDRCFTFNSGKQG-PVLKVTGTGVERSLTLTINLQHFDYY-------RDSMVSGIHMILHGQDETP-VKIRGPMISPGYTSFIKVEKKKILNLKSPYKTNCGEL----DLKYFNGYSMHTCWLEKLTDYVVKHCNCKDFFMPGNHSICDLGTAYTCMWPKWE---EYDKNKLANCPLPCEIDSFHSETISRALFPSEQYAHKLKKILEKEPHMKNVVIKNVKQFMRDNLLRVVIYYDDMSYERVEQQPSYDTLEWLGDVGGQIGLFIGAGAMSYFEFVD 454
            K EEE         +     +S+LHGL++IF  +R  ++R +W      +    +    E  +YY  Y   T         + FPAV+ CN+N+ R S ++  ++    ++  L NN    P    A+E        ++  RS              A HDI +ML+ C+F G  C+A++F   F + G +C+TFNSG+ G P LK    G    L + +++Q  +Y          S  +GI + +H QDE P +   G  ++PG+ +F+  ++++++ L  P+ T C  +    DL +F+ YS+  C ++  T Y+V++CNC+   MPG+   C       C  P  +   E D+     C +PC +  +  E +S    PS+  A  L K   K            +Q++ +N+L + I+++ ++YE +EQ+ +Y+    LGD+GGQ+GLFIGA  ++  E  D
Sbjct:    4 KAEEEEVGGVQPVSIQAFASSSTLHGLAHIFSYERLSLKRALWALCFLGSLAVLLCVCTERVQYYFHYHHVTKLDEVAASQLTFPAVTLCNLNEFRFSQVSKNDLYHAGELLALLNNRYEIPDTQMADEKQLEILQDKANFRSFKPKPFNMREFYDRAGHDIRDMLLSCHFRGEVCSAEDFKVVFTRYG-KCYTFNSGRDGRPRLKTMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPFIDQLGFGVAPGFQTFVACQEQRLIYLPPPWGT-CKAVTMDSDLDFFDSYSITACRIDCETRYLVENCNCRMVHMPGDAPYCTPEQYKECADPALDFLVEKDQEYCV-CEMPCNLTRYGKE-LSMVKIPSKASAKYLAKKFNKS-----------EQYIGENILVLDIFFEVLNYETIEQKKAYEIAGLLGDIGGQMGLFIGASILTVLELFD 455

The following BLAST results are available for this feature:

BLAST of TCONS_00035456-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00035456-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASIC1	1.118e-57	28.69	Acid-sensing ion channel 1 OS=Homo sapiens GN=ASIC...	[more]

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TCONS_00035456-protein (polypeptide) - C. hemisphaerica