TCONS_00035454-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00035454-protein
Unique NameTCONS_00035454-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00035454-protein ID=TCONS_00035454-protein|Name=TCONS_00035454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=554bp
MLNFQDIAKITVEAVQENQEDEASSPIRRRKTKKELRNEEVSQHVQDLID
TTSFHGISYIFDKRHPIRRVIWFFITTSAFIYSMLKVYESTVEHFSYPFS
TARMRQYVDSIDFPAVSFCNVNDMRMSVLNGTNVDQAVLSGEASGVNGTE
YVRLKRLSAHEIDEMLIDCEFDGQKCSTKNFTQFYAKQGDQCYSFNSGKP
GHPLQTVSGPGKRRSLILTLDIQHYDXEYVRLKRLSAHEIDEMLIDCEFD
GQKCSTKNFTQFYAKQGDQCYSFNSGKPGHPLQTVSGPGKRRSLILTLDI
QHYDYYRGGLKGGIHLILHGQGETPVRMRGEMISPGYSTYIQVEKKKIIN
LKPPFKTKCGSLKLKHFSQYSKSTCWLEQLTNYVTEKCNCKDAFMPGDFR
VCSFEESALCMWMNWEHFDNKKLYNCPLSCEIDSYSGKTISRSLFPTEQY
AKVLKEKLKNEKHLQKVDMGDATKFMRDNLLRVVIYYDNMSYELLEQVPS
YDTLEWLGDVGGQIGLFIGAGAMSYFEVIDALALVVFARFFKRFTDEDLD
DYEA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_020726XLOC_020726Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00035454TCONS_00035454Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: Biological Process
TermDefinition
GO:0006814sodium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005272sodium channel activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006814 sodium ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005272 sodium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001873Epithelial sodium channelPRINTSPR01078AMINACHANNELcoord: 313..331
score: 26.32
coord: 244..255
score: 34.67
coord: 289..307
score: 26.53
coord: 109..125
score: 40.47
coord: 511..527
score: 39.76
coord: 258..274
score: 35.29
coord: 477..497
score: 23.43
coord: 497..511
score: 23.2
coord: 381..398
score: 22.89
IPR001873Epithelial sodium channelPFAMPF00858ASCcoord: 232..530
e-value: 1.5E-55
score: 188.9
coord: 50..226
e-value: 7.3E-28
score: 97.6
NoneNo IPR availableGENE3D1.10.287.770coord: 485..539
e-value: 1.0E-15
score: 56.9
NoneNo IPR availableGENE3D2.60.470.10coord: 231..397
e-value: 1.8E-32
score: 112.4
coord: 421..484
e-value: 1.8E-4
score: 20.8
coord: 100..230
e-value: 1.3E-22
score: 80.2

Blast
[Close]
BLAST of TCONS_00035454-protein vs. Swiss-Prot (Human)
Match: ASIC2 (Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC2 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.154e-51
Identity = 134/500 (26.80%), Postives = 224/500 (44.80%), Query Frame = 0 
Query:   45 VQDLIDTTSFHGISYIFD-KRHPIRRVIWFFITTSAFIYSMLKVYESTVEHFSYPFSTARMRQYVDSIDFPAVSFCNVNDMRMSVLNGTNVDQAVLSGEASGVNGTEYVRLKRLSAHEIDEMLIDCEFDGQKCSTKNFTQFYAKQGDQCYSFNSGKPGHPLQTVSGPGKRRSLILTLDIQHYDXEYVRLKRLSAHEIDEMLIDCEFDGQKCSTKNFTQFYAKQGDQCYSFNSGKPGHPLQTVSGPGKRRSLILTLDIQHYDYY-------RGGLKGGIHLILHGQGETP-VRMRGEMISPGYSTYIQVEKKKIINLKPPF-KTKCGSLKLKHFSQYSKSTCWLEQLTNYVTEKCNCKDAFMPGDFRVCSFEESALC----MWMNWEHFDNKKLYNCPLSCEIDSYSGKTISRSLFPTEQYAKVLKEKLKNEKHLQKVDMGDATKFMRDNLLRVVIYYDNMSYELLEQVPSYDTLEWLGDVGGQIGLFIGAGAMSYFEVID 530
            +Q   +T++ HGI +IF      IRRV+W      +    +++  E    +FSY   T        S+ FPAV+ CN+N  R S L   ++  A            E + L  ++    D  L D           NF  +  KQ                               L+  H             H++ +M++ C+F GQ+C  ++FT  + K G +CY FNSG+ G PL T    G    L + LDIQ  +Y            + G+ + +H Q E P ++  G  ++PG+ T++  +++++  L PP+ + +   + L  F  YS + C ++  T Y+ E CNC+   MPGD   C+ E+   C    + +  E   N  L  C   C +  Y+ K +S    P++  AK L++K    +           K++ +N+L + I+++ ++YE +EQ  +Y+    LGD+GGQ+GLFIGA  ++  E+ D
Sbjct:   17 IQIFANTSTLHGIRHIFVYGPLTIRRVLWAVAFVGSLGLLLVESSERVSYYFSYQHVTKVDEVVAQSLVFPAVTLCNLNGFRFSRLTTNDLYHA-----------GELLALLDVNLQIPDPHLADPSVLEALRQKANFKHYKPKQFSM----------------------------LEFLHR----------VGHDLKDMMLYCKFKGQECGHQDFTTVFTKYG-KCYMFNSGEDGKPLLTTVKGGTGNGLEIMLDIQQDEYLPIWGETEETTFEAGVKVQIHSQSEPPFIQELGFGVAPGFQTFVATQEQRLTYLPPPWGECRSSEMGLDFFPVYSITACRIDCETRYIVENCNCRMVHMPGDAPFCTPEQHKECAEPALGLLAEKDSNYCL--CRTPCNLTRYN-KELSMVKIPSKTSAKYLEKKFNKSE-----------KYISENILVLDIFFEALNYETIEQKKAYEVAALLGDIGGQMGLFIGASILTILELFD 452
The following BLAST results are available for this feature:
BLAST of TCONS_00035454-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASIC22.154e-5126.80Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC... [more]
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