TCONS_00028310-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028310-protein
Unique NameTCONS_00028310-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028310-protein ID=TCONS_00028310-protein|Name=TCONS_00028310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MSHLRKSVKGSEGNWIDMQINTFSNWVNANLNQRDRSIENLEEGFADGVN
LVHLYEVVSKKRIGKYTKEPKFHNQYMDNVSLVLKAAEQDGVKMVSIDSD
HIVNGNVKMILGLLWQFILRYQIVGADDKNVKIALKKLLLIWLQHVIPEQ
RITNLTSDWNDGVALCNLINVLQPGLCPDYKHLDRSNPVDNAAKGMKLAE
EKFGIPQIISPYHMTNPHVDELSMMTYLSYFTQDNGIGEQWTLGLVNDWN
KQHPVQNFNNDWSDGKALGSLVNNFAPGIHIENQPDDDVQNCKNAMQVAD
DCLGVPSIITAQEMANPNIPELAVMAYTVQFRNAKLSNGYMPPMSDVSNA
EAFSASGPGLSEPRVGEENEIYVRCEQNIPFDDIQVSVAG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016039XLOC_016039Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028310TCONS_00028310Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001715CH-domain
IPR001589Actinin_actin-bd_CS
IPR017868Filamin/ABP280_repeat-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001715Calponin homology domainSMARTSM00033ch_5coord: 135..231
e-value: 2.0E-22
score: 90.5
coord: 233..331
e-value: 0.0011
score: 28.2
coord: 19..120
e-value: 1.9E-19
score: 80.6
IPR001715Calponin homology domainGENE3D1.10.418.10coord: 126..234
e-value: 1.6E-21
score: 75.8
coord: 240..338
e-value: 1.7E-12
score: 46.6
IPR001715Calponin homology domainPFAMPF00307CHcoord: 20..122
e-value: 1.1E-20
score: 73.7
coord: 251..333
e-value: 4.6E-12
score: 46.0
coord: 135..231
e-value: 6.6E-17
score: 61.6
IPR001715Calponin homology domainGENE3D1.10.418.10coord: 14..125
e-value: 3.1E-31
score: 107.3
IPR001715Calponin homology domainPROSITEPS50021CHcoord: 17..122
score: 15.637
IPR001715Calponin homology domainPROSITEPS50021CHcoord: 232..333
score: 11.076
IPR001715Calponin homology domainPROSITEPS50021CHcoord: 133..233
score: 13.485
IPR001715Calponin homology domainCDDcd00014CHcoord: 19..122
e-value: 1.15662E-20
score: 84.6699
IPR001715Calponin homology domainCDDcd00014CHcoord: 136..231
e-value: 8.61313E-17
score: 74.2695
IPR001715Calponin homology domainSUPERFAMILY47576Calponin-homology domain, CH-domaincoord: 13..231
IPR001715Calponin homology domainSUPERFAMILY47576Calponin-homology domain, CH-domaincoord: 247..334
IPR001589Actinin-type actin-binding domain, conserved sitePROSITEPS00019ACTININ_1coord: 19..28
IPR017868Filamin/ABP280 repeat-likePROSITEPS50194FILAMIN_REPEATcoord: 345..390
score: 9.486

Blast
[Close]
BLAST of TCONS_00028310-protein vs. Swiss-Prot (Human)
Match: FLNB (Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 4.656e-54
Identity = 97/226 (42.92%), Postives = 142/226 (62.83%), Query Frame = 0 
Query:   15 WIDMQINTFSNWVNANLNQRDRSIENLEEGFADGVNLVHLYEVVSKKRI-GKYTKEPKFHNQYMDNVSLVLKAAEQDGVKMVSIDSDHIVNGNVKMILGLLWQFILRYQIV------GADDKNVKIALKKLLLIWLQHVIPEQRITNLTSDWNDGVALCNLINVLQPGLCPDYKHLDRSNPVDNAAKGMKLAEEKFGIPQIISPYHMTNPHVDELSMMTYLSYFTQ 233
            W  +Q NTF+ W N +L   ++ I NL+   +DG+ L+ L EV+S+KR+  KY + P F    ++NVS+ L+  +++ +K+VSIDS  IV+GN+K+ILGL+W  IL Y I         DD   K   K+ LL W+Q+ IP   ITN   +W DG AL  L++   PGLCPD++  D   PVDNA + M+ A++  G+PQ+I+P  + +P VDE S+MTYLS F +
Sbjct:   14 WKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQFPK 239

HSP 2 Score: 92.4337 bits (228), Expect = 4.111e-20
Identity = 53/128 (41.41%), Postives = 75/128 (58.59%), Query Frame = 0 
Query:  239 EQWTLGLVNDWNKQHPVQNFNNDWSDGKALGSLVNNFAPGIHIENQ---PDDDVQNCKNAMQVADDCLGVPSIITAQEMANPNIPELAVMAYTVQFRNAKLSNGYMPPMSDVSNAEAFSASGPGLSEP 363
            +Q  LG + +     P+ NFN +W DGKALG+LV++ APG+  + +   P   V N + AMQ ADD LGVP +IT +E+ +P++ E +VM Y  QF  AKL  G   P+    N +   A G G+ EP
Sbjct:  142 KQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQFPKAKLKPG--APLKPKLNPKKARAYGRGI-EP 266
The following BLAST results are available for this feature:
BLAST of TCONS_00028310-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLNB4.656e-5442.92Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2[more]
back to top