TCONS_00028277-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028277-protein
Unique NameTCONS_00028277-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028277-protein ID=TCONS_00028277-protein|Name=TCONS_00028277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
MRYLFCFYSVAQYSNENGMTIEELAKVFSYLVLRPREKDGKIFTENLDIQ
ILAFIRMVRACESHFGATSLAEDFDESKWLWPEATRKDVTMRLSGTPDGS
FCIRQSERCRGEWTLTVRKEGRERLIRIIQRNQNGAPCFGFREELLNFGS
LEDLVLHFRDNSLEDYNSKLNIKLLHPCGKPDQLNITEGQQDMLVDQARY
EELVEKLNHIKFMELKLEEQQLALEECKTLVESQTDVVNFLEEQMELAER
IKKEAPTSDKSDLENSIVSMKEFLNMEKAKWHEMDDMLTKLKQECDQIST
QLTELSAGVPGLTDEYNQLERLLQKNDPNLFAEKHGEDGLEEKDMQKFEV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016018XLOC_016018Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028277TCONS_00028277Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000980SH2
IPR008936Rho_GTPase_activation_prot
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 210..251
NoneNo IPR availableGENE3D1.10.555.10coord: 1..69
e-value: 6.7E-6
score: 24.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..350
IPR000980SH2 domainPRINTSPR00401SH2DOMAINcoord: 110..121
score: 28.19
coord: 98..108
score: 48.71
coord: 79..93
score: 25.35
coord: 147..161
score: 34.61
IPR000980SH2 domainSMARTSM00252SH2_5coord: 77..164
e-value: 9.8E-9
score: 45.0
IPR000980SH2 domainPFAMPF00017SH2coord: 79..158
e-value: 7.1E-10
score: 38.8
IPR000980SH2 domainGENE3D3.30.505.10coord: 70..206
e-value: 2.6E-20
score: 72.3
IPR000980SH2 domainPROSITEPS50001SH2coord: 79..178
score: 15.328
IPR000980SH2 domainSUPERFAMILY55550SH2 domaincoord: 72..181
IPR008936Rho GTPase activation proteinSUPERFAMILY48350GTPase activation domain, GAPcoord: 4..66

Blast
[Close]
BLAST of TCONS_00028277-protein vs. Swiss-Prot (Human)
Match: P85A (Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Homo sapiens GN=PIK3R1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 3.989e-22
Identity = 80/283 (28.27%), Postives = 141/283 (49.82%), Query Frame = 0 
Query:    1 MRYLF-CFYSVAQYSNENGMTIEELAKVFSYLVLRPREKDGKIFTENLDIQILAFIRMVRACESHFGA---------TSLAED-------FDESKWLWPEATRKDVTMRLSGTPDGSFCIR-QSERCRGEWTLTVRKEGRERLIRIIQRNQNGAPCFGFREELLNFGSLEDLVLHFRDNSLEDYNSKLNIKLLHPCGKPDQLNITEGQQDMLVDQARYEELVEKLN--HIKFMELKLEEQQLALEEC---------KTLVESQTDVVNFLEEQMELAERIKKE 254
            ++YL   F+ ++Q S++N +    L+++FS ++ R         TENL I+++  +      E              T++A +         +++W W + +R++V  +L  T DG+F +R  S +  G++TLT+RK G  +LI+I  R+      +GF + L  F S+ +L+ H+R+ SL  YN KL++KLL+P  K         QQD +V +   E + +KL+  + +F E   E  +L  E           +T +E+  + +   EEQ +  ER  KE
Sbjct:  240 LQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASSD-NTENL-IKVIEILISTEWNERQPAPALPPKPPKPTTVANNGMNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGK----YGFSDPL-TFSSVVELINHYRNESLAQYNPKLDVKLLYPVSK--------YQQDQVVKEDNIEAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKE 507
The following BLAST results are available for this feature:
BLAST of TCONS_00028277-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P85A3.989e-2228.27Phosphatidylinositol 3-kinase regulatory subunit a... [more]
back to top