TCONS_00028190-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028190-protein
Unique NameTCONS_00028190-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length665

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028190-protein ID=TCONS_00028190-protein|Name=TCONS_00028190-protein|organism=Clytia hemisphaerica|type=polypeptide|length=665bp
MDQSKILLIALVALVLTSTAHAQCPDSCICGSNNITRCSHKTLSIIETSK
IPKSTVQLYYSDNFITSIDKNDFAGLTNLHTLQLQQNQISNIEDGSFQDL
LNLKMLILSDNNLKSITKDTFKGLSNLEHLMLNGQKNQLEIEDNAFVHNP
NLLTLMLTGNKIPTLRNTVFNGLTKLKNLYFDLDKITHIEENVFKSIPKG
VTMENTGRKGVASPNGCCCRRARALAGTKFETLCSINQCSSAGACKEVKP
SSSTTQHPKTTTPVQPSPQTSSSANLVKPSSSEVTAPKITSSSNSQPTST
INPQKSSSKTMVKPSSSEVTAPKITSSLNAQPTSTIKPQMSSSHTMIKPS
SSAGTKPEPTSSLNPQPASTSQYQKTSTIKQAKPSSSSIEPEIEASITTM
QPSQSTAPVNIIHSSSSATVESLTSYFRQEQSSAAIVIKPSRTPSMGYSM
ESLSASSQTQASMSPSTYLSQSPSVSKESSHVMSLPSLSTSIKPSSTLGE
SMFSSSSLISESIDKSYSAMQSTNLPSSSSSISIKSASISLNESSVKTSQ
MLSQSRSLTPSASPSSSYQTSMSSTTIIITSASESPDSQEESSTQTPYIS
KMMSSMKPTRTSATPAPETEPNTITPSSSSVQQQASSSVQGNAVQTNFSI
KILITMLIVFVAVLF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015959XLOC_015959Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028190TCONS_00028190Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 100..123
e-value: 0.022
score: 23.9
coord: 173..196
e-value: 100.0
score: 5.1
coord: 124..148
e-value: 290.0
score: 1.2
coord: 76..99
e-value: 0.0042
score: 26.3
coord: 150..172
e-value: 21.0
score: 10.6
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 23..559
e-value: 6.7E-34
score: 116.3
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 30..196
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 140..180
e-value: 2.3E-6
score: 27.2
coord: 77..134
e-value: 9.4E-14
score: 50.8
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 175..196
score: 5.109
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 54..75
score: 4.755
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 78..99
score: 8.105
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 151..172
score: 5.941
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 102..123
score: 7.365
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..390
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 448..475
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 548..634

Blast
[Close]
BLAST of TCONS_00028190-protein vs. Swiss-Prot (Human)
Match: LRFN5 (Leucine-rich repeat and fibronectin type-III domain-containing protein 5 OS=Homo sapiens GN=LRFN5 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.928e-22
Identity = 82/222 (36.94%), Postives = 111/222 (50.00%), Query Frame = 0 
Query:   11 LVALVLTSTA-HAQ-CPDSCIC---GSNNITRCSHKTLSIIETSKIPKSTVQLYYSDNFITSIDKNDFAGLTNLHTLQLQQNQISNIEDGSFQDLLNLKMLILSDNNLKSITKDTFKGLSNLEHLMLNGQKNQLE-IEDNAFVHNPNLLTLMLTGNKIPTLRNTVFNGLTKLKNLYFDLDKITHIEENVFKSIPKGVTMENTGRKGVASPNGCCCRRARALA 226
            L  L L   A  AQ CP  C+C     N  T C+ K L  +  + I + TV+L  +DNF+T+I + DFA +T+L  L L +N IS I   +F DL NL+ L L+ N L  IT D F GLSNL HL+LN   NQL  I   AF     L  L L+ N + T+       +  L  L  D + I +I +  F  + K   ++ T  K    P     +RA+ LA
Sbjct:    5 LFYLFLIGIAVKAQICPKRCVCQILSPNLATLCAKKGLLFVPPN-IDRRTVELRLADNFVTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGLSNLHHLILNN--NQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLA 223
The following BLAST results are available for this feature:
BLAST of TCONS_00028190-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRFN51.928e-2236.94Leucine-rich repeat and fibronectin type-III domai... [more]
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