TCONS_00028181-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028181-protein
Unique NameTCONS_00028181-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length204

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028181-protein ID=TCONS_00028181-protein|Name=TCONS_00028181-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
AVKDVIQTGFSSHIGGIAVDWLSKNVYWSQQKLRRIEVSRLDGSYKRIVV
NDIGGMITKIAIDPTIGQMYWLQSNKGETYSVYRAQLDGSSPQPLSTFKE
KPFGLAVDVATNRVYWLTEKFIATALWDGSQNKTIYSTKATSTGGGLVLF
KDHLYLCEIEPVLLKPTVASIHKETGIKKTINTKITFSNLCHDISVYHSS
LQKG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015950XLOC_015950Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028181TCONS_00028181Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000033LDLR_classB_rpt
IPR0110426-blade_b-propeller_TolB-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000033LDLR class B repeatSMARTSM00135LY_2coord: 47..92
e-value: 5.6
score: 12.2
coord: 3..46
e-value: 3.6E-9
score: 46.4
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 24..66
score: 11.525
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 67..111
score: 8.625
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 112..153
score: 6.745
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 2..204
e-value: 5.8E-15
score: 54.8
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 4..177

Blast
[Close]
BLAST of TCONS_00028181-protein vs. Swiss-Prot (Human)
Match: LRP1B (Low-density lipoprotein receptor-related protein 1B OS=Homo sapiens GN=LRP1B PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.033e-19
Identity = 56/188 (29.79%), Postives = 92/188 (48.94%), Query Frame = 0 
Query:   16 GIAVDWLSKNVYWSQQKLRRIEVSRLDGSYKRIVVNDIGGMITKIAIDPTIGQMYWLQSNKGETYSVYRAQLDGSSPQ-PLSTFKEKPFGLAVDVATNRVYWLTEKFIATALWDGSQNKTIYSTKATSTGGGLVLFKDHLYLCEIEPVLLKPTVASIHKETGIKKTINTKITFSNLCHDISVYHSSLQ 202
             +AVDW+ KN+YWS  + R IEVS+L+G Y  I+V+        +++DP  G +YW+     E   + R  +DG++    + T   +P  L +D    R+YW  E  I  +  DGS    + +         L LF+D++Y  + +      +++  HK +G  +   + I   +   DI VYHS  Q
Sbjct: 3091 ALAVDWIGKNLYWSDTEKRIIEVSKLNGLYPTILVSKRLKFPRDLSLDPQAGYLYWIDC--CEYPHIGRVGMDGTNQSVVIETKISRPMALTIDYVNRRLYWADENHIEFSNMDGSHRHKVPNQDIPGV-IALTLFEDYIYWTDGK----TKSLSRAHKTSGADRL--SLIYSWHAITDIQVYHSYRQ 3269

HSP 2 Score: 75.485 bits (184), Expect = 5.218e-16
Identity = 37/115 (32.17%), Postives = 66/115 (57.39%), Query Frame = 0 
Query:    3 KDVIQTGFSSHIGGIAVDWLSKNVYWSQQKLRRIEVSRLDGSYKRIVVNDIGGMITKIAIDPTIGQMYWLQSNKGETYSVYRAQLDGSSPQPLSTFK-EKPFGLAVDVATNRVYW 116
            +D+I  G    + GIAVDW++ N+YW+      IEV+RL+GS++ ++++        IA+ P  G ++W  +  G+   + +A+LDGS    L +     P G+++D   N++YW
Sbjct: 1945 EDIITNGLG-RVEGIAVDWIAGNIYWTDHGFNLIEVARLNGSFRYVIISQGLDQPRSIAVHPEKGLLFW--TEWGQMPCIGKARLDGSEKVVLVSMGIAWPNGISIDYEENKLYW 2056
The following BLAST results are available for this feature:
BLAST of TCONS_00028181-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRP1B2.033e-1929.79Low-density lipoprotein receptor-related protein 1... [more]
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