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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00028180-protein ID=TCONS_00028180-protein|Name=TCONS_00028180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=693bp
RLMVFFNERSRSVNPTEPFNTLEIISMDGTNHRMLVNFTNLFRYDITVDA
SKERVYWLHSREKIHINTISLKGTNLKMSFELNPEQVEVLNVAVLDDTMF
WIDRGKANGRDEYLKWRTLLPTPDKGMAPIYSNKDWDYSGTKDLVAVQQD
RFNELHPCNINNGGCSHLCYSVSMTPLLSKCGCPLGYGFVDKDKKRCQEL
KEADCFVRCNGRCQKNATCSELKPCFDENLDCSLCVGVNFQCFTGSCVVH
QSRICDGKKNCLHGEDEQNCPTPPVPPSTTTIPTTTEPIMYITEHRTSIY
TEYTAGIVSGAILTSFVFICALYFACRLRQKKAAMLNSAKTENLLREAAS
FKVTHSNKETVNILTQKQLQENSSGLITDSVFTDSYASSSDLSRLQQRIT
KQPSFSMRYVTGSSTNVTDTNVAPPYNPPPTIASSDGISLASINEYTHPD
DDITDEEDDDVISEISKLTLGYIPAPPATPIYCPSEVDSCLVSAMDSVSV
CQDNEPHRPYTRTNNLYDRRRRKTSRADSRSCSCDDHSAMSGFSQNTNHR
PSVPPCSECSYCSTSDIYLPMGGRLKPPSSYHPPSMVSEESAYTSRTLPR
HLRPGSSRPLLPSLASGISRCSSETSIVTVRHKDELPFVNENDMTGNYYN
EYGPPPSPGGPSSPVEFPPDMNNFEDFVEEEALENDILMEPPR Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SMART | SM00192 | LDLa_2 | coord: 234..272
e-value: 8.9E-6
score: 35.2 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PROSITE | PS50068 | LDLRA_2 | coord: 234..271
score: 11.05 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SUPERFAMILY | 57424 | LDL receptor-like module | coord: 234..273 |
| None | No IPR available | GENE3D | 4.10.400.10 | | coord: 236..272
e-value: 4.8E-8
score: 32.6 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 641..672 |
| None | No IPR available | CDD | cd00112 | LDLa | coord: 240..270
e-value: 2.04652E-5
score: 41.4234 |
| None | No IPR available | SUPERFAMILY | 63825 | YWTD domain | coord: 20..106 |
| IPR011042 | Six-bladed beta-propeller, TolB-like | GENE3D | 2.120.10.30 | | coord: 5..185
e-value: 1.1E-8
score: 34.2 |
| IPR023415 | Low-density lipoprotein (LDL) receptor class A, conserved site | PROSITE | PS01209 | LDLRA_1 | coord: 247..270 |
Blast
The following BLAST results are available for this feature:
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