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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00027574-protein ID=TCONS_00027574-protein|Name=TCONS_00027574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=780bp
MDSLNIQDDTEESTHSIIGKPRRRPVQKQNPVEEVTIEMKAKQQDSKTND
EKQVQESKFITTPRDEKGEEPESTKPKVPATRTEKIEQFSIDSKDTKQKE
QQPRAQQIEESPMTSTIIPQQETQFMASPRRQPSPPLYPPSSPGALKNLN
ANSHQQPPALHRQYSSPSKASSTGEIISIQLEKGSKGLGITLATDEAIDD
DSFVYIKRLVPGSVADLNGLLKPGDRIITVNGANVEDLTQKEIINIFRQL
SGTVSMEFFRPPDLTPSHKRYTSDDNSNLTLPRTPSVSPKKEQPKQFILQ
NDQQEVVPLNILNSNIPASSSTPFELSDKIGVSEEVTFNSNDGLSFADSL
LASDGDNSLEEELPAAPIPAAPKVLVEGHERLLQMTSPPVAAAPYVGDSD
SESTHNEHSQLEGFDEYGIYNEDKYLHQLPPKNPTSSIRPLSGTSSIRSS
TRSASGIPRPIRSRSNSLHSSDSGGGQSRRNSTEDHNRPPPPRVILDKSF
DSFIQRKDFKFYTPGVVNTVLLSLDKKMAVNNINAEFMALRQIKCLDTCD
VGNRASNRSKNRVKTILPYDKNRVQLAGGEESDYINASHVKLPLDGSKPS
QYIITQAPLESTVCDFWRCVWEKKVEVIVMLTREEENSKIKCHKYWPSVK
KTPMKLMDKFTVELLYEEFNGSYIYRQIQIHNVKMDKSLFITQACFTQWP
ETGVPKDAIEFLGFMKFVRNFSSSSTTVVHCSVGVGRSGIYVVLDAIWNS
VEQDTKIDIAKMIQQAKEQRQLLIQTKVKF Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006470 | protein dephosphorylation |
| GO:0016311 | dephosphorylation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004725 | protein tyrosine phosphatase activity |
| GO:0005515 | protein binding |
| GO:0016791 | phosphatase activity |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0016311 |
dephosphorylation |
| biological_process |
GO:0006470 |
protein dephosphorylation |
| molecular_function |
GO:0016791 |
phosphatase activity |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0004725 |
protein tyrosine phosphatase activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000242 | PTP type protein phosphatase | PRINTS | PR00700 | PRTYPHPHTASE | coord: 726..744
score: 52.01
coord: 773..780
score: 21.28
coord: 602..622
score: 56.5
coord: 689..706
score: 36.34
coord: 757..772
score: 22.94
coord: 583..590
score: 65.29 |
| IPR000242 | PTP type protein phosphatase | SMART | SM00194 | PTPc_3 | coord: 532..779
e-value: 5.4E-77
score: 271.8 |
| IPR000242 | PTP type protein phosphatase | PFAM | PF00102 | Y_phosphatase | coord: 557..777
e-value: 4.7E-63
score: 212.8 |
| IPR000242 | PTP type protein phosphatase | PROSITE | PS50055 | TYR_PHOSPHATASE_PTP | coord: 533..780
score: 42.414 |
| IPR001478 | PDZ domain | SMART | SM00228 | pdz_new | coord: 186..262
e-value: 4.6E-18
score: 76.0 |
| IPR001478 | PDZ domain | PFAM | PF00595 | PDZ | coord: 179..257
e-value: 2.1E-14
score: 53.5 |
| IPR001478 | PDZ domain | PROSITE | PS50106 | PDZ | coord: 178..262
score: 19.762 |
| IPR001478 | PDZ domain | SUPERFAMILY | 50156 | PDZ domain-like | coord: 171..269 |
| IPR003595 | Protein-tyrosine phosphatase, catalytic | SMART | SM00404 | ptp_7 | coord: 690..780
e-value: 3.2E-11
score: 53.3 |
| IPR029021 | Protein-tyrosine phosphatase-like | GENE3D | 3.90.190.10 | | coord: 506..780
e-value: 3.0E-80
score: 269.3 |
| IPR029021 | Protein-tyrosine phosphatase-like | SUPERFAMILY | 52799 | (Phosphotyrosine protein) phosphatases II | coord: 508..777 |
| None | No IPR available | GENE3D | 2.30.42.10 | | coord: 145..263
e-value: 2.0E-22
score: 79.0 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 263..292 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 426..496 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..173 |
| None | No IPR available | CDD | cd00992 | PDZ_signaling | coord: 176..257
e-value: 3.67235E-17
score: 76.8366 |
| None | No IPR available | CDD | cd00047 | PTPc | coord: 560..777
e-value: 2.21589E-76
score: 247.499 |
| IPR016130 | Protein-tyrosine phosphatase, active site | PROSITE | PS00383 | TYR_PHOSPHATASE_1 | coord: 729..739 |
| IPR000387 | Tyrosine specific protein phosphatases domain | PROSITE | PS50056 | TYR_PHOSPHATASE_2 | coord: 712..780
score: 16.671 |
Blast
BLAST of TCONS_00027574-protein vs. Swiss-Prot (Human)
Match: PTN20 (Tyrosine-protein phosphatase non-receptor type 20 OS=Homo sapiens GN=PTPN20 PE=1 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 3.346e-52 Identity = 99/272 (36.40%), Postives = 153/272 (56.25%), Query Frame = 0
Query: 509 FKFYTPGVVNTVLLSLDKKMAVNNINAEFMALRQIKCLDTCDVGNRASNRSKNRVKTILPYDKNRVQLAGGEESDYINASHVKLPLDGSKPSQYIITQAPLESTVCDFWRCVWEKKVEVIVMLTREEENSKIKCHKYWPSVKKTPMKLMDKFTVELLYEEFNGSYIYRQIQIHNVKMDKSLFITQACFTQWPETGVPKDAIEFLGFMKFVRNFSSSSTTVVHCSVGVGRSGIYVVLDAIWNSVEQDTKIDIAKMIQQAKEQRQLLIQTKVKF 780
F F+ + L L++K A +I EFMAL + GN+ SNR KNR + ILPYD RV L G+ DYINAS++++ ++ + YI TQ PL ST+ DFW+ V E VI M+TRE E IKC+ YWP K P++L F V L + +I R Q+ S + Q FT+WP+ G P A F+ ++++ R + VVHCS G+GR+G+++ +D ++ ++ ++ +I ++ Q +EQR ++QTK ++
Sbjct: 135 FNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNLPGEFNSGNQPSNREKNRYRDILPYDSTRVPL--GKSKDYINASYIRI-VNCGEEYFYIATQGPLLSTIDDFWQMVLENNSNVIAMITREIEGGIIKCYHYWPISLKKPLEL-KHFRVFLENYQILQYFIIRMFQVVEKSTGTSHSVKQLQFTKWPDHGTPASADSFIKYIRYARKSHLTGPMVVHCSAGIGRTGVFLCVDVVFCAIVKNCSFNIMDIVAQMREQRSGMVQTKEQY 402
The following BLAST results are available for this feature:
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