TCONS_00027517-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027517-protein
Unique NameTCONS_00027517-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1213

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027517-protein ID=TCONS_00027517-protein|Name=TCONS_00027517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1213bp
MXKKETVLQTINHSTRKNDTETSPDSDNLIATLPQTSENTLKQISSPKNE
KLASQPESGEEKDVVTPLRKPSDSSITSSAAVKRDEPAVRRSIRKRSTKS
FGDDTITFELKVNSRKDKEQKATTVGKETEEKSSNVFKSNEEPKRSERRR
SSKTDDETVLKKNKGNPQQQSRVSDSEMITGSLSSKVDDNEDSLAQDIVK
LSQSTTMSNPTVEHLLQGTGSGSSKNKVEITYIDDKQADIEIIRGVESQR
KGESKRRSSGSQKSSDTNTLKQPTGAADSATVPTTSTTRKRSEKSSLVAT
ASSTTEKGSGKNFEQKYELFKQKWKAEKEKRRLMKEAEAVQNTDQKCQTA
SKVQTQSTNQPNIQKKKEPEPQAPSLTKPKGNQLRDSTIDLTELSPSEQV
SSSQGALISTSLSTKQNKISPVEPPSSRLETKESPSQLTTKLSFRKESPS
KLSSKSTTYSCSSQAGKLAPSLTQIVASKIQKKAQTIQIQKQNMELEYER
HRKEEIDLTGIALQSIKSPPKPNQTPPKRKSLDFITGRLKYKKKMEMLKS
QGHDNKRPRLIEGAPTLLASLEQLQSPPLATPLPSSPSNLDNSIQQQQHS
TDFSHHQKPSSTKNYQQQQQTSLLIQHVVPTSKHQQTSPTKRIHSKQKQS
PTKQHSYPPRSSKLPTQCLSDFTHRPLTIQPTLLPSPLKTPDTTRKQDAG
PTKTPKESPISITPKHSNEKRTMNRNSMDQPKTPKVIETRRTRRDSEKQM
RSRKSDPNLTTPEFTCNLTGCNKSFRKQHLLEYHFKYFHTAKPPIKRSRS
SVSVSSTDSNHHHHHHHHHNSSLSLPTTPSGEHSTHKQEDISGTSSHIDI
TDQSEDESESESEFITFDDCVKCICQDECDTGFMIQCEQCFTWQHGECVG
YLTQKNVPLFYLCHVCSNPKALRSAFKYKNDYTFQRFGKIPPVNDPFGES
KMADSALKESLMSVRHVDKEDEELLSSIMVASNAMVTDLYNIRDLMQNIR
KRFLTFSTNNALEDADKSYNHLDNEELEKLLREMDSSNEQYKNVENQTPP
CVSTSQIQRSGSQEAGGDKAIQPSGDKVIQPSGDNVAQNLGVTATLDLGD
KEALTILSTDRTEVLPCGDSKKIVESEDSLQTTESEKTQSGRIETLGEIG
TKNNSDQSRIQDIEMDESNHSTDTNSQSDRSTVGLSQAVCNAXRTANQIV
VPLVSANQCVLRI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015510XLOC_015510Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027517TCONS_00027517Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR013087Znf_C2H2_type
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1020..1047
NoneNo IPR availableCOILSCoilCoilcoord: 477..504
NoneNo IPR availableCOILSCoilCoilcoord: 323..343
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 872..917
e-value: 3.8E-6
score: 36.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 796..926
e-value: 1.4E-10
score: 40.7
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 766..789
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 764..794
score: 12.154
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 870..916
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 860..919

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027517-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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