TCONS_00025702-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00025702-protein
Unique NameTCONS_00025702-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length524

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00025702-protein ID=TCONS_00025702-protein|Name=TCONS_00025702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=524bp
EKNSWNVQVFEFLFVCKTLLCKLRVNFLKSYSQLKFKKMFDTFFATAEYV
DEQDFYNAIREYIISLLTFIFVYFMSYLFISRYKRKIEESDYEDDLVYRV
SIWLCCFTMTVSIGAVLLLPFSIFSNEILISYQSSFYMKWLNDSLIHGLW
NQIFLGTYIAMFLAMPFAYFFTESEGFAGSRKGIKSRIYETFVVLFLLLI
LVSSFVWVFSAFMSGEKGGWLASVSETWMPPLPFIYSCISLFGALLLLIC
TPLGFATLFTILGNVIVRPKFFIDLDDQIQALIFEEEDIRRKLMRSLSYT
GLKTTDTKESLEAKLSTAKEKRLKLERERDASVFEKTLLYPLCLIALLAA
TAVCLLMVAVNSFRLVFGQQDLPFTDKYPSLGKMSISKLGWFGILLQIFL
IFYILTASVVGFYSSPFFIHLKPKLRNTSTTTLIANCIIFLIFSSALPVL
VRTLGITSFNLMGEFGRLDWLGNYELVLFYNLLFEASTSFCLVNKFTKSV
RDALYEQFKYSSLFKFLRRKTKEN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_014432XLOC_014432Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00025702TCONS_00025702Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008075LIMR
IPR006876LMBR1-like_membr_prot
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 308..328
IPR008075Lipocalin-interacting membrane receptorPRINTSPR01692LIPOCALINIMRcoord: 230..251
score: 63.64
coord: 107..129
score: 65.76
coord: 149..171
score: 48.37
coord: 428..449
score: 54.55
coord: 470..493
score: 50.0
coord: 398..418
score: 62.5
coord: 340..361
score: 46.02
IPR006876LMBR1-like membrane proteinPFAMPF04791LMBR1coord: 60..294
e-value: 6.4E-47
score: 160.5
coord: 311..496
e-value: 2.3E-28
score: 99.3

Blast
[Close]
BLAST of TCONS_00025702-protein vs. Swiss-Prot (Human)
Match: LMBRL (Protein LMBR1L OS=Homo sapiens GN=LMBR1L PE=1 SV=2)

HSP 1 Score: 400.593 bits (1028), Expect = 2.814e-135
Identity = 214/483 (44.31%), Postives = 310/483 (64.18%), Query Frame = 0 
Query:   50 VDEQDFYNAIREYIISLLTFIFVYFMSYLFISRYKRKIE--ESDYEDDLVYRVSIWLCCFTMTVSIGAVLLLPFSIFSNEILISYQSSFYMKWLNDSLIHGLWNQIFLGTYIAMFLAMPFAYFFTESEGFAGSRKGIKSRIYETFVVLFLLLILVSSFVWVFSAFMSGEKGGWLASVSETWMPPLPFIYSCISLFGALLLLICTPLGFATLFTILGNVIVRPKFFIDLDDQIQALIFEEEDIRRKLMRSLSYTGLKTTDTKESLEAKLSTAKEKRLKLERERDASVFEKTLLYPLCLIALLAATAVCLLMVAVNSFRLVFGQQDLPFTDKYPSLGKMSISKLGWFGILLQIFLIFYILTASVVGFYSSPFFIHLKPKLRNTSTTTLIANCIIFLIFSSALPVLVRTLGITSFNLMGEFGRLDWLGNYELVLFYNLLFEASTSFCLVNKFTKSVRDALYEQFKYSSL------FKFLRRKTKEN 524
            V EQ F+  IRE IIS L F  +Y + ++F++R+K+  E    D ED  V ++++ LC FT+ +++GAVLLLPFSI SNE+L+S   ++Y++WLN SLIHGLWN +FL + +++   MPFAYFFTESEGFAGSRKG+  R+YET V+L LL +LV   VWV SA +   K     S+ + W   LP++YSCIS  G LLLL+CTPLG A +F++ G ++V+P+   DL++Q+    FEE  + R++      T        E L  ++   + +R+ LE+ R AS +++ L YPL ++ LL  T + +L+VA++   L+  +  +P   +  SLG++S SKLG FG ++Q+ LIFY++ +SVVGFYSSP F  L+P+  +T+ T +I NC+  L+ SSALPV  RTLG+T F+L+G+FGR +WLGN+ +V  YN  F   T+ CLV  FT +VR  L   F    L      F    RKT+  
Sbjct:   11 VREQLFHERIRECIISTLLFATLYILCHIFLTRFKKPAEFTTVDDEDATVNKIALELCTFTLAIALGAVLLLPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFSNLSLIFLMPFAYFFTESEGFAGSRKGVLGRVYETVVMLMLLTLLVLGMVWVASAIVDKNKAN-RESLYDFWEYYLPYLYSCISFLGVLLLLVCTPLGLARMFSVTGKLLVKPRLLEDLEEQLYCSAFEEAALTRRICNP---TSCWLPLDMELLHRQVLALQTQRVLLEKRRKASAWQRNLGYPLAMLCLLVLTGLSVLIVAIHILELLIDEAAMPRGMQGTSLGQVSFSKLGSFGAVIQVVLIFYLMVSSVVGFYSSPLFRSLRPRWHDTAMTQIIGNCVCLLVLSSALPVFSRTLGLTRFDLLGDFGRFNWLGNFYIVFLYNAAFAGLTTLCLVKTFTAAVRAELIRAFGLDRLPLPVSGFPQASRKTQHQ 489
The following BLAST results are available for this feature:
BLAST of TCONS_00025702-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LMBRL2.814e-13544.31Protein LMBR1L OS=Homo sapiens GN=LMBR1L PE=1 SV=2[more]
back to top