TCONS_00023034-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023034-protein
Unique NameTCONS_00023034-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023034-protein ID=TCONS_00023034-protein|Name=TCONS_00023034-protein|organism=Clytia hemisphaerica|type=polypeptide|length=522bp
MADTGKENQKFDDQTIKLYVGGIDTSWDTEKIQKILGNDGIKRVDVVKNY
AFAFVVNKEKADNIITQYSGTNIDGCRINIQISKNKQNLPDSENLCFECG
KPGHWAKECQLRIDRYARLDRPPPRGGFRGRGRGRGDYGGRGGYGGRGGY
GGRGGYGGRGGYGGRGGYGGRGDYGGRGDYGGRGDYGGRGGGRGRGDYGR
DTYQRDPYARDPYLPRDPYARDPYPRDQHRDSYGRDPYSKSGYRERSPPR
TYDYSRAPASDPYAAERRRLAYGDSTPSSSSAPYATQSKRADPYASGQSQ
RSDPYASQRSDPSASQRGDPYASQRSDPYASQRSDPYSKERSAPYASQTT
DPYATSRPVQSQQVASAPYATQSQASTATYATQSYAATPSYATPARTASY
SSYPAQTQSSSAYATQSYASSSYATQSYASSSYATQSYASSYPAQSQSSA
APYATQSQNGGARYATQSYAQYAADSPTKSLPYQQSTSVSSASYGTSASA
YSAQPAAATPGSASAGYSYSYR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012945XLOC_012945Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023034TCONS_00023034Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 95..111
e-value: 3.5E-4
score: 29.9
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 88..250
e-value: 2.1E-8
score: 33.6
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 95..110
e-value: 4.5E-6
score: 26.4
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 96..109
score: 10.427
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 85..114
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 17..81
e-value: 1.9E-7
score: 40.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 16..85
score: 9.354
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 9..91
NoneNo IPR availableGENE3D3.30.70.330coord: 1..87
e-value: 6.0E-10
score: 38.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 501..522
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..373

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023034-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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