TCONS_00022670-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022670-protein
Unique NameTCONS_00022670-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length332

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022670-protein ID=TCONS_00022670-protein|Name=TCONS_00022670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
KHIIESFKKNKRGINNMMQAKVKTAPQKQYPIMDTRTVFHAPEPVMIASV
KISVKQPAAEPLKRKVPPPVAAKPAKVYSPASAELRTPTEDFQPPPIFDD
EVPPATNGSADSALDDELDMLTSMLSLGLQNTHHPDFFGVCYKCRDTIIG
EGKGCTAMGNQYHVLCFLCKECEKRLTGLEFYCLNDNPLCEQCYTNTLED
CVVCDQKITERILKAVGKSYHPQCFKCTNCSKKLDGVPFTLDSANRVHCV
ECYQVKFSPKCAACSELIMPTNDRGETVHIVSMQKNFHVHCYKCEDCGIL
LSNEEGRGCFPIGDHLLCQRCNGKRMANTTEL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012735XLOC_012735Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022670TCONS_00022670Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 200..252
e-value: 1.4E-13
score: 61.1
coord: 260..321
e-value: 3.5E-13
score: 59.8
coord: 140..193
e-value: 2.2E-10
score: 50.5
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 261..322
e-value: 2.7E-6
score: 27.4
coord: 141..196
e-value: 2.9E-10
score: 40.1
coord: 201..256
e-value: 6.3E-10
score: 39.0
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 201..234
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 199..259
score: 13.256
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 139..198
score: 9.514
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 260..328
score: 9.385
NoneNo IPR availableGENE3D2.10.110.10coord: 264..332
e-value: 1.5E-11
score: 43.5
NoneNo IPR availableGENE3D2.10.110.10coord: 139..199
e-value: 2.3E-14
score: 52.6
NoneNo IPR availableGENE3D2.10.110.10coord: 200..263
e-value: 1.2E-15
score: 57.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..96
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 226..297
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 141..167
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 169..227

Blast
[Close]
BLAST of TCONS_00022670-protein vs. Swiss-Prot (Human)
Match: LPP (Lipoma-preferred partner OS=Homo sapiens GN=LPP PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 2.005e-74
Identity = 101/212 (47.64%), Postives = 141/212 (66.51%), Query Frame = 0 
Query:  115 DDELDMLTSMLSLGLQNTHHPDFFGVCYKCRDTIIGEGKGCTAMGNQYHVLCFLCKECEKRLTGLEFYCLNDNPLCEQCYTNTLEDCVVCDQKITERILKAVGKSYHPQCFKCTNCSKKLDGVPFTLDSANRVHCVECYQVKFSPKCAACSELIMPTNDRGETVHIVSMQKNFHVHCYKCEDCGILLSNEEGRGCFPIGDHLLCQRCNGKRM 326
            +DEL+ LT  +   ++N    ++FG C +C + ++GEG GCTAM   +HV CF C  C  +L G  FY +     CE CY NTLE C VC + I ERIL+A GK+YHP CF C  C + LDG+PFT+D+   +HC+E +  KF+P+C+ C E IMP   + ETV IV++ ++FHVHCY+CEDCG LLS  + +GC+P+  H+LC+ CN  R+
Sbjct:  390 EDELEHLTKKMLYDMENPPADEYFGRCARCGENVVGEGTGCTAMDQVFHVDCFTCIICNNKLRGQPFYAVEKKAYCEPCYINTLEQCNVCSKPIMERILRATGKAYHPHCFTCVMCHRSLDGIPFTVDAGGLIHCIEDFHKKFAPRCSVCKEPIMPAPGQEETVRIVALDRDFHVHCYRCEDCGGLLSEGDNQGCYPLDGHILCKTCNSARI 601
The following BLAST results are available for this feature:
BLAST of TCONS_00022670-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LPP2.005e-7447.64Lipoma-preferred partner OS=Homo sapiens GN=LPP PE... [more]
back to top