TCONS_00022031-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00022031-protein
Unique Name	TCONS_00022031-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	650

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00022031-protein ID=TCONS_00022031-protein|Name=TCONS_00022031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=650bp
MFGPGVGIGLHTIRPKRRSTLDLMHDLLKDIATSSLFNSFIMFIIGINAI
VIGLETSISLKKVYGETFSLLDDLFLAIYTAEFLIKVCADYRGYWKSAYN
IFDFVIIAVSFIQILMSSLDVGNNSLGVFRLLRALRTLRTISFVEGLQVL
VTALIDTIRNSVLNVVFLLALLMLFFGVAGYYIFGYDEDGDRERWGTLNN
AMLTLFTFVTADGWTDIQRRLEEKYPGSQWFTVVFLFLGHFIFTNLFIGI
IIMNIHEATEKFLQAQRFEKEAQLSLKKEYLYKRQHEDVRQMLEKQKTSH
YTNFNEMASSFVKTLRHDDYVIMKDVCTNLLWIETYIDSLDYLDLYMHRV
QHGHRNFALVLAEMAERNYKKQYGLLLTDDHNDRYEPFLKKEDNIKTPIP
QLPAFTVTNASEEMMGSSSQHAVNPSRPSSVVNPMAEFTSFGSWGASGSS
RSSGVSNLDGEGTPSYVVRRFTAPSSRRASETPSLDGGEGPSDYTSTHRR
SSGDPSGEEGSSRRASLDEDQNSNQRMKYPQRQSLTIHTNRLLSSPVMEG
SGGNRKIDDIQEEDEENDQPRPQKQTKSSKDNALQPGMKLFRFHSQDHRD
EESDDSDCDTPILEDCPEEGDVQENTRPKTVQARRIEVVPRASMNDEEDV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012372	XLOC_012372	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00022031	TCONS_00022031	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005821	Ion_trans_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006811	ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005821	Ion transport domain	PFAM	PF00520	Ion_trans	coord: 35..260 e-value: 1.8E-38 score: 132.1
None	No IPR available	GENE3D	1.10.287.70		coord: 33..260 e-value: 4.0E-44 score: 150.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 442..631
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 35..256

Blast

[Close]

BLAST of TCONS_00022031-protein vs. Swiss-Prot (Human)
Match: CTSR3 (Cation channel sperm-associated protein 3 OS=Homo sapiens GN=CATSPER3 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 3.159e-55
Identity = 112/343 (32.65%), Postives = 199/343 (58.02%), Query Frame = 0

Query:   27 LLKDIATSSLFNSFIMFIIGINAIVIGLETSISLKKVYGETFSLLDDLFLAIYTAEFLIKVCADYRGYWKSAYNIFDFVIIAVSFIQILMSSLDVGN--NSLGVFRLLRALRTLRTISFVEGLQVLVTALIDTIRNSVLNVVFLLALLMLFFGVAGYYIFGYDEDGDRERWGTLNNAMLTLFTFVTADGWTDIQRRLEEK-YPGSQWFTVVFLFLGHFIFTNLFIGIIIMNIHEATEKFLQAQRFEKEAQLSLKKEYLYKRQHEDVRQMLEKQKTSHYTNFNEMASSFVKTLRHDDYVIMKDVCTNLLWIETYIDSLDYLDLYMHRVQHGHRNFALVLAEMAE 366
             +K +  S  F   ++  +  NA  + L TS  ++          +  F++I T+E  +KV  D   YWK+ YN+ D +II V F+   +  L +G     L +   +++LR L+ I + +G++ L+TA+  T+  +V +V+ LL LLM  F + G+ +FG  ++GD + WG L  A  TLF+  T DGWTD+Q++L+ + +  S+ FT++F+ L  FIF N+F+G++IM+  ++  KF +    E++  L  +K+ + +RQ E++ +++  QK +  T+F+E+  +F KTL H D +++ D  T+L +I+ Y  +LDY D  +H++Q  +     VL+ M E
Sbjct:   42 FVKRVIMSRFFKIIMISTVTSNAFFMALWTSYDIRYRLFRLLEFSEIFFVSICTSELSMKVYVDPINYWKNGYNLLDVIIIIVMFLPYALRQL-MGKQFTYLYIADGMQSLRILKLIGYSQGIRTLITAVGQTVY-TVASVLLLLFLLMYIFAILGFCLFGSPDNGDHDNWGNLAAAFFTLFSLATVDGWTDLQKQLDNREFALSRAFTIIFILLASFIFLNMFVGVMIMHTEDSIRKFERELMLEQQEMLMGEKQVILQRQQEEISRLMHIQKNADCTSFSELVENFKKTLSHTDPMVLDDFGTSLPFIDIYFSTLDYQDTTVHKLQELYYEIVHVLSLMLE 382

The following BLAST results are available for this feature:

BLAST of TCONS_00022031-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00022031-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CTSR3	3.159e-55	32.65	Cation channel sperm-associated protein 3 OS=Homo ...	[more]

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TCONS_00022031-protein (polypeptide) - C. hemisphaerica