TCONS_00021580-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021580-protein
Unique NameTCONS_00021580-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021580-protein ID=TCONS_00021580-protein|Name=TCONS_00021580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MRKLFIGGLRRETQEETFNDYFARFGAIADVVIIKDPNSGQSRGFGFVTY
NNSDSVEEVFRTRPHELDGKTVDCKRAMPREFNASSSHAKTTRLFVGGFK
GFDLEPEELKQYLESRHPTSFGTVDNIDFLKDKETGTNKGFGFIDCSDTD
FADRLAISENQFELKGRKMSIKKAEPKDGGSGDQYGGRGGGRGGGRGRGR
GGSRGGGRGGSNYQNSSGFGNQSSGGYNPGYNSNQGYNQGYNSQSNQSNY
GNQGSYGNQGSYGNQGSYG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012105XLOC_012105Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021580TCONS_00021580Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 93..172
e-value: 3.0E-13
score: 60.0
coord: 3..75
e-value: 2.8E-20
score: 83.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 4..70
e-value: 6.1E-14
score: 51.5
coord: 94..169
e-value: 2.2E-6
score: 27.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 92..176
score: 14.59
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 2..85
score: 16.927
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 2..115
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 85..207
NoneNo IPR availableGENE3D3.30.70.330coord: 87..213
e-value: 1.8E-15
score: 56.5
coord: 1..86
e-value: 9.0E-20
score: 70.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..269

Blast
[Close]
BLAST of TCONS_00021580-protein vs. Swiss-Prot (Human)
Match: RA1L2 (Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 3.962e-38
Identity = 67/178 (37.64%), Postives = 106/178 (59.55%), Query Frame = 0 
Query:    1 MRKLFIGGLRRETQEETFNDYFARFGAIADVVIIKDPNSGQSRGFGFVTYNNSDSVEEVFRTRPHELDGKTVDCKRAMPREFNASS-SHAKTTRLFVGGFKGFDLEPEELKQYLESRHPTSFGTVDNIDFLKDKETGTNKGFGFIDCSDTDFADRLAISENQFELKGRKMSIKKAEPK 177
            +RKLFIGGL  ET +E+   +F ++G + D V+++DPN+ +SRGFGFVTY   + V+    T PH++DG+ V+ KRA+ RE +    +H    ++FVGG K  D E   L+ Y E      +G ++ I+ + D+ +G  +GF F+   D D  D++ I +    +KG    ++KA PK
Sbjct:   13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKE-DTEEHHLRDYFE-----QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH-TVKGHNCEVRKALPK 183
The following BLAST results are available for this feature:
BLAST of TCONS_00021580-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RA1L23.962e-3837.64Heterogeneous nuclear ribonucleoprotein A1-like 2 ... [more]
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