TCONS_00021543-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021543-protein
Unique NameTCONS_00021543-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021543-protein ID=TCONS_00021543-protein|Name=TCONS_00021543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=544bp
VSLLVEGKGDALVQIRSDLNYSVVFQHEVSSIAPLRGSEQGRTKLTVGGH
GLNGHLVEVIIGVSVCETIESTYSQLTCWSPAHASGSADIEVQDKGYQLD
AQQTETTFTFVYDSTLTPIAKQETILGNVMQDVGNTLRIGVEGGSTTQSY
QFHFNDIVIQGTEVVTKEGDVFTYSDAFLLPHGGYSIRLYIEGKGYTQFT
HNGKTQDFYPGAITGKISSVTPPLGSKYGGTEITINGYGFRGEGGSYPNR
QPGTSDIVIAQSTVTIGGKPCRITSKTMTQIKCITPPSVDEVCPNCMTGP
IEVSVDDQIKSTTHFEYSDDESPEISSVSPTTGKSGDTITLTGNFPHSTG
VSVKVGVSECQSVIVESSTKITCTLQHHTAGNTTLKVHIDSSGDSNSVPF
VYGLSGSVSGSPLSGFGGGIEVVISGTGYGEDTMVTICDVDCPVKKDEVT
VTNIKCLSPAQEGPIDVAITCAIKISSGEQEQILSAQYLYDPSKTSVVTD
VSPSRVGTGGGVDVTFTGTGFDTSPVKPEVTIDGIECQVKSVSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012079XLOC_012079Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021543TCONS_00021543Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002909IPT
IPR013783Ig-like_fold
IPR014756Ig_E-set
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002909IPT domainSMARTSM00429iptmega2coord: 214..318
e-value: 0.13
score: 21.4
coord: 26..111
e-value: 0.075
score: 22.2
coord: 322..403
e-value: 0.091
score: 21.9
IPR002909IPT domainPFAMPF01833TIGcoord: 29..112
e-value: 1.9E-10
score: 40.6
coord: 323..402
e-value: 1.1E-9
score: 38.1
coord: 497..544
e-value: 2.7E-7
score: 30.5
coord: 411..470
e-value: 2.2E-5
score: 24.4
coord: 217..317
e-value: 3.2E-13
score: 49.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 314..404
e-value: 3.4E-13
score: 48.7
coord: 195..313
e-value: 9.7E-16
score: 56.9
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 26..117
e-value: 5.4E-12
score: 45.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 484..544
e-value: 1.5E-8
score: 33.9
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 408..483
e-value: 7.1E-8
score: 31.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 315..337
NoneNo IPR availableCDDcd00603IPT_PCSRcoord: 497..544
e-value: 6.94767E-6
score: 43.2122
NoneNo IPR availableCDDcd00603IPT_PCSRcoord: 323..402
e-value: 1.38375E-5
score: 42.4418
NoneNo IPR availableCDDcd00603IPT_PCSRcoord: 28..111
e-value: 1.47454E-6
score: 45.1381
NoneNo IPR availableCDDcd00603IPT_PCSRcoord: 216..319
e-value: 6.26179E-12
score: 60.9313
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 216..313
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 497..544
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 323..402
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 411..470
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 28..108

Blast
BLAST of TCONS_00021543-protein vs. Swiss-Prot (Human)
Match: PKHL1 (Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.041e-25
Identity = 134/554 (24.19%), Postives = 238/554 (42.96%), Query Frame = 0
Query:    1 VSLLVEGKGDALVQIRSDLNYSVVFQHEVSSIAPLRGSEQGRTKLTVGGHGL--NGHLVEVIIGVSVCETIESTYSQLTCWSPAHASGSADIEVQDKGYQLDAQQTETTFTFVYDSTLTPIAKQETILGNVMQDVGNTLRIGVEG---GSTTQSYQFHFNDIVIQGTEVVTKEGDVFTYSDAFLLPHGGYSIRLYIEGKGYTQFTHNGKTQDFYPGAIT---GKISSVTPPLGSKYGGTEITINGYGFRGEGGSYPNRQPGTSDIVIAQSTVTIGGKPCRITSKTMTQIKCITPPSVDEVCPNCMTGPIEVS--VDDQIKSTTHFEYSDDESPEISSVSPTTGKSGDTITLTG-NFPHS-TGVSVKVGVSECQSVIVESSTKITCTLQHHTAGNTTLKVHIDSSGDSNS-VPFVYGLSGSVSGSPLSGFGGGIEVVISGTGYG-EDTMVTICDVDCPVKKDEVTVTNIKCLSPAQEGPIDVAITCAIKISSGEQEQILSAQYLYDPSKTSVVTDVSPSRVGTGGGVDVTFTGTGFDTSPVKPEVTIDGIECQVK 540
            V+L V   G A+  + ++ +   V    +  + P  GS  G T +T+ G G   +   V+V++G   C+ +   Y+ + C +   A    D+++   G      Q +   TF Y  ++TP      I G     V  ++++ +EG   G+  +       +   +  EV   E ++        LP G +S+ + +  KG               G +T     ++S++P  GS  GGT + I G GF      YP             +TVTIG +PC+I S    ++ C TP           TG ++V   V+        F Y+ +++P +  + P+ G  G  I +TG NF      +SV +   +C +V + + + + C +  H  G   + +H  + G + S V F Y L+          FGGG  + ++GTG+  +++++ +C  +C + +     T + C  P+  G       C + + +G+        + Y  S T ++T VSP R  T GG  +T  G+GF  +     +TI   +C V+
Sbjct: 1633 VTLTVYNLGTAINTLSNEFDRRFVLLPNIDLVLPNAGSTTGMTSVTIKGSGFAVSSAGVKVLMGHFPCKVLSVNYTAIECETSPAAQQLVDVDLLIHGV---PAQCQGNCTFSYLESITPY-----ITGVFPNSVIGSVKVLIEGEGLGTVLEDIAVFIGNQQFRAIEV--NENNITALVTP--LPVGHHSVSVVVGSKGLAL------------GNLTVSSPPVASLSPTSGSIGGGTTLVITGNGF------YP-----------GNTTVTIGDEPCQIISINPNEVYCRTPAGT--------TGMVDVKIFVNTIAYPPLLFTYALEDTPFLRGIIPSRGPPGTEIEITGSNFGFEILEISVMINNIQC-NVTMANDSVVQCIVGDHAGGTFPVMMHHKTKGSAMSTVVFEYPLNIQNINPSQGSFGGGQTMTVTGTGFNPQNSIILVCGSECAIDRLRSDYTTLLCEIPSNNG-TGAEQACEVSVVNGKDLSQSMTPFTYAVSLTPLITAVSPKRGSTAGGTRLTVVGSGFSENMEDVHITIAEAKCDVE 2135          

HSP 2 Score: 95.5153 bits (236), Expect = 2.451e-20
Identity = 85/282 (30.14%), Postives = 124/282 (43.97%), Query Frame = 0
Query:   21 YSVVFQHEVSSIAPLRGSEQGRTKLTVGGHGLNGHLVEVIIGVSVCETIESTYSQLTCWSPAHASGSADIEVQDKGYQLDAQQTETTFTFVYDSTLTPI-----AKQETILGNVM-----QDVGNTLRIGVE---GGSTTQSYQFHFNDIVIQGTEVVTKEGDVFTYSDAFLLPH---GGYSIRLYIEGKGYTQFTHNGKTQDFYPGAI--TGKISSVTPPLGSKYGGTEITINGYGFRGEGGSYPNRQPGTSDIVIAQSTVTIGGKPCRITSKTMTQIKCI 284
            +  V+Q ++S I P  GS  G T LT+ G G N +  +V++G   C  IE   +++TC +P    G+ DI V   G+Q  A+       F Y+   TPI      K  TILG V       + GN L   +    GG T Q   ++F DI                     LLP    G + I + +   G+        T+D    +I    +++S+ P  GS +GGTEITI G+GF                 + A++TV +G  PC +TS +   IKCI
Sbjct: 1149 FYFVYQSQISHIWPDSGSIAGGTLLTLSGFGFNEN-SKVLVGNETCNVIEGDLNRITCRTPKKTEGTVDISVTTNGFQATARD-----AFSYNCLQTPIITDFSPKVRTILGEVNLTIKGYNFGNELTQNMAVYVGGKTCQILHWNFTDIRC-------------------LLPKLSPGKHDIYVEVRNWGF------ASTRDKLNSSIQYVLEVTSMFPQRGSLFGGTEITIRGFGF---------------STIPAENTVLLGSIPCNVTSSSENVIKCI 1384          
The following BLAST results are available for this feature:
BLAST of TCONS_00021543-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PKHL11.041e-2524.19Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2[more]
back to top