TCONS_00021487-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021487-protein
Unique Name	TCONS_00021487-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	472

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021487-protein ID=TCONS_00021487-protein|Name=TCONS_00021487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=472bp
RKKQKQFKMAVKKTENEISQQITENNIQFIQSEVIDLHGVTKTLVTSSKY
FLRQLRNNGGWLHITSAIMGISMDSEPLDGTGIAMEIDNQNVDFKPDLQS
FCILPWLEETSAPTASIMCDLELKGRDLEYWRVCCRQQCKAQIQNLTATG
YSLFSAFEYEFYLVEKGTFKPIFDVTNIYSDVFVDEIRPFVYETMKTLDD
MGITTEMFTPEFAPGQLELTLSPDFGVKSVDNAMRYKKVVKAMAKKHGME
ALFLSKPYPDESGSSNHFNHSLWHTTEKTNAFSDPDKPYKLSAICMNWIG
GLQEHSKALASLFWANMNCFERCKPGTFAPTNNSWGFDNRTICYRVKNDS
PSVTYVENRIPGAGSNPYLVTAGCLIAGMDGIKRNLKPKSEPFVGNLYEV
DVLPEGIESLPKSFEESLKCLQEDEVLSKELGDVFIKAFSALRNDEIKKC
NENFENDEQRFEYYRKLYGKFL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012050	XLOC_012050	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021487	TCONS_00021487	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008146	Gln_synth_cat_dom
IPR008147	Gln_synt_b-grasp
IPR014746	Gln_synth/guanido_kin_cat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004356	glutamate-ammonia ligase activity
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006807	nitrogen compound metabolic process
GO:0006542	glutamine biosynthetic process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006542	glutamine biosynthetic process
biological_process	GO:0006807	nitrogen compound metabolic process
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0004356	glutamate-ammonia ligase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008146	Glutamine synthetase, catalytic domain	SMART	SM01230	Gln_synt_C_2	coord: 132..378 e-value: 5.5E-75 score: 265.1
IPR008146	Glutamine synthetase, catalytic domain	PFAM	PF00120	Gln-synt_C	coord: 133..458 e-value: 6.4E-86 score: 288.4
IPR008147	Glutamine synthetase, beta-Grasp domain	GENE3D	3.10.20.70		coord: 11..129 e-value: 1.5E-15 score: 56.8
IPR008147	Glutamine synthetase, beta-Grasp domain	SUPERFAMILY	54368	Glutamine synthetase, N-terminal domain	coord: 16..121
IPR014746	Glutamine synthetase/guanido kinase, catalytic domain	GENE3D	3.30.590.10		coord: 131..467 e-value: 5.4E-86 score: 288.3
None	No IPR available	SUPERFAMILY	55931	Glutamine synthetase/guanido kinase	coord: 133..460

Blast

[Close]

BLAST of TCONS_00021487-protein vs. Swiss-Prot (Human)
Match: LGSN (Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 5.798e-52
Identity = 131/469 (27.93%), Postives = 221/469 (47.12%), Query Frame = 0

Query:   17 EISQQITENNIQFIQSEVIDLHGVTKTLVTSSKYFLRQLRNN----GGWLHITSAIMGISMDSEPLDGTGIAMEIDNQNVDFKPDLQSFCILPWLEETSAPTASIMCD-LELKGRDLEYWRVCCRQQCKAQIQNLTATGYSLFSAFEYEFYLVEKGTFKPIFDVTNIYSDVFV---------DEIRPFVYETMKTLDDMGITTEMFTPEFAPGQLELTLSPDFGVKSVDNAMRYKKVVKAMAKKHG-MEALFLSKPYPDESGSSNHFNHSLWHTTEKTNAFSDPDKPYKLSAICMNWIGGLQEHSKALASLFWANMNCFERCKPG-----TFAPTNNSWGFDNRTICYRVKNDSPSVTYVENRIPGAGSNPYLVTAGCLIAGMDGIKRNLKPKSEPFVGNLYEVDVLPEGIESLPKSFEESLKCLQEDEVLSKELGDVFIKAFSALRNDEIKKCNENFENDEQRF-EYY 464
             I Q + +N +QF++ E  DLHGV+++    + +F  ++ +      G+L +        M++       I     N ++   P+L +F +LPW + T    A ++CD   + G  L       R   K Q+ +L A+G+SL SAF Y+F          IF V  I +   +         +  +PF+ E +  L   G   E F+    PGQ+E++  P+FG+ S DNA   +  VK +A+K+  + + F+   + D    S   +HSLW    K N F       +L+     W+ GL +HS AL+ L   +++C +R            PT  +WG+++ +  + +K      T +EN++  A +NPYLV A  + AG+DG    L   +E   G     D        +P   E++L  L+ED+ L + LG+ FI+ F A++  E++  NE    +  +F EY+
Sbjct:   75 HIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMPRGYLEVIPNPKDNEMNN-------IRATCFNSDIVLMPELSTFRVLPWADRT----ARVICDTFTVTGEPL---LTSPRYIAKRQLSHLQASGFSLLSAFIYDFC---------IFGVPEILNSKIISFPALTFLNNHDQPFMQELVDGLYHTGANVESFSSSTRPGQMEISFLPEFGISSADNAFTLRTGVKEVARKYNYIASFFIETGFCD----SGILSHSLWDVDRKKNMFCSTSGTEQLTITGKKWLAGLLKHSAALSCLMAPSVSCRKRYSKDRKDLKKSVPT--TWGYNDNSCIFNIKCHGEKGTRIENKLGSATANPYLVLAATVAAGLDG----LHSSNEVLAGPDESTDFYQVEPSEIPLKLEDALVALEEDQCLRQALGETFIRYFVAMKKYELE--NEEIAAERNKFLEYF 508

The following BLAST results are available for this feature:

BLAST of TCONS_00021487-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021487-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LGSN	5.798e-52	27.93	Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1	[more]

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TCONS_00021487-protein (polypeptide) - C. hemisphaerica