TCONS_00021374-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021374-protein
Unique NameTCONS_00021374-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length181

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021374-protein ID=TCONS_00021374-protein|Name=TCONS_00021374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MTHQQYQVDRNYLWNIFQRIDRNGDQSIDCNELQTALKNGSWAPFNLETT
RLMIGMFDFNNNGTIDFNEFCSLWQYVTDWTRTFKGYDLDGNGTIDHKEL
SQAMHGFGFRVSERIISILIRRFDRTGQGQVRFDDFIQLCIIVRMLTNSF
QRFDYQRNGNIQVSYEQFLTMVFQTKAATSK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011966XLOC_011966Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021374TCONS_00021374Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 115..143
e-value: 41.0
score: 4.7
coord: 12..40
e-value: 4.9
score: 12.2
coord: 49..77
e-value: 0.048
score: 22.8
coord: 79..107
e-value: 0.0079
score: 25.4
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 82..140
e-value: 3.1E-8
score: 33.9
coord: 16..73
e-value: 2.9E-8
score: 34.0
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 45..73
score: 6.535
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 8..43
score: 11.11
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 75..110
score: 12.784
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 111..146
score: 8.125
IPR002048EF-hand domainCDDcd00051EFhcoord: 16..75
e-value: 1.78694E-10
score: 52.5501
IPR002048EF-hand domainCDDcd00051EFhcoord: 82..139
e-value: 3.1202E-11
score: 54.4761
NoneNo IPR availableGENE3D1.10.238.10coord: 2..32
e-value: 2.2E-4
score: 20.6
NoneNo IPR availableGENE3D1.10.238.10coord: 94..126
e-value: 2.2E-14
score: 52.9
NoneNo IPR availableGENE3D1.10.238.10coord: 127..181
e-value: 4.4E-6
score: 25.7
NoneNo IPR availableGENE3D1.10.238.10coord: 65..93
e-value: 8.4E-11
score: 41.0
NoneNo IPR availableGENE3D1.10.238.10coord: 33..64
e-value: 1.2E-8
score: 34.2
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 21..33
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 88..100
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 12..173

Blast
[Close]
BLAST of TCONS_00021374-protein vs. Swiss-Prot (Human)
Match: PDCD6 (Programmed cell death protein 6 OS=Homo sapiens GN=PDCD6 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 8.350e-62
Identity = 86/165 (52.12%), Postives = 121/165 (73.33%), Query Frame = 0 
Query:    9 DRNYLWNIFQRIDRNGDQSIDCNELQTALKNGSWAPFNLETTRLMIGMFDFNNNGTIDFNEFCSLWQYVTDWTRTFKGYDLDGNGTIDHKELSQAMHGFGFRVSERIISILIRRFDRTGQGQVRFDDFIQLCIIVRMLTNSFQRFDYQRNGNIQVSYEQFLTMVF 173
            D+++LWN+FQR+D++    I   ELQ AL NG+W PFN  T R +I MFD  N   ++F+EF  +W+Y+TDW   F+ YD D +G ID  EL QA+ GFG+R+S++   ILIR+FDR G+GQ+ FDDFIQ CI+++ LT+ F+R+D  ++G IQVSYEQ+L+MVF
Sbjct:   24 DQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVF 188
The following BLAST results are available for this feature:
BLAST of TCONS_00021374-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDCD68.350e-6252.12Programmed cell death protein 6 OS=Homo sapiens GN... [more]
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