TCONS_00021036-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021036-protein
Unique NameTCONS_00021036-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021036-protein ID=TCONS_00021036-protein|Name=TCONS_00021036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MRWAAKLVSTFPESFISKRRLLTSLLPRRCLSRDVNKIKATLYVHWPFCN
KLCPYCDFNKYIRRNINEDEMIGGLQTDLEHFIKDYHIGEVKSVYFGGGT
PSLAPPYVVSAILETIHKNAFIADSAEITLEANPTTTEESKLRNFKTEGI
NRVSIGIQALNNKDLKMLGREHTSEQAISCYKKAMELFGGRVSIDFMFGR
PKQSVQDWKKELKQICDLGGNHVSLYQLTMKKHTPMERDHRKGRIFLPKD
DALAEMYDLSVQMLDEVGLERYEVSNFAKLGHESYHNSAYWNDMDYIG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011803XLOC_011803Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021036TCONS_00021036Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006638Elp3/MiaB/NifB
IPR013785Aldolase_TIM
IPR004559Coprogen_oxidase_HemN-rel
IPR007197rSAM
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0003824catalytic activity
GO:0004109coproporphyrinogen oxidase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006779porphyrin-containing compound biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006779 porphyrin-containing compound biosynthetic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004109 coproporphyrinogen oxidase activity
molecular_function GO:0051536 iron-sulfur cluster binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006638Elongator protein 3/MiaB/NifBSMARTSM00729MiaBcoord: 39..259
e-value: 2.7E-47
score: 173.1
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70coord: 4..295
e-value: 1.2E-40
score: 139.5
IPR004559Coproporphyrinogen III oxidase, oxygen-independent relatedTIGRFAMTIGR00539TIGR00539coord: 41..298
e-value: 1.1E-73
score: 246.4
IPR007197Radical SAMPFAMPF04055Radical_SAMcoord: 44..213
e-value: 5.7E-19
score: 69.0
IPR007197Radical SAMSFLDSFLDS00029Radical_SAMcoord: 44..212
e-value: 6.4E-16
score: 54.0
NoneNo IPR availableSFLDSFLDF00288HemN-like,_clustered_with_nuccoord: 34..298
e-value: 0.0
score: 327.1
NoneNo IPR availableSFLDSFLDF00562HemN-like,_clustered_with_heacoord: 33..298
e-value: 0.0
score: 317.8
NoneNo IPR availableCDDcd01335Radical_SAMcoord: 49..247
e-value: 2.02811E-9
score: 53.8765
NoneNo IPR availableSUPERFAMILY102114Radical SAM enzymescoord: 36..298

Blast
[Close]
BLAST of TCONS_00021036-protein vs. Swiss-Prot (Human)
Match: RSAD1 (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial OS=Homo sapiens GN=RSAD1 PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 9.513e-76
Identity = 111/260 (42.69%), Postives = 164/260 (63.08%), Query Frame = 0 
Query:   39 KATLYVHWPFCNKLCPYCDFNKYIRRNINEDEMIGGLQTDLEHFIKDYHIGEVKSVYFGGGTPSLAPPYVVSAILETIHKNAFIADSAEITLEANPTTTEESKLRNFKTEGINRVSIGIQALNNKDLKMLGREHTSEQAISCYKKAMELFGGRVSIDFMFGRPKQSVQDWKKELKQICDLGGNHVSLYQLTMKKHTPMERDHRKGRIFLPKDDALAEMYDLSVQMLDEVGLERYEVSNFAKLGHESYHNSAYWNDMDYIG 298
            +A LYVHWP+C K C YC+FNKYI R + E  M   L T+ +  ++   +  V+SV+FGGGTPSLA P+ V+A+LE + + A +    E+TLEANPT+   S+L  F   G+NR+SIG+Q+L++ +L++LGR H++  A+    +A  LF GRVS+D M G P Q V  W  +L+++     +H+SLYQL++++ T +    ++G +  P  +  AEMY     +L E G  +YEVSNFA+ G  S HN  YW    Y+G
Sbjct:   39 RAALYVHWPYCEKRCSYCNFNKYIPRRLEEAAMQKCLVTEAQTLLRLSGVQRVESVFFGGGTPSLASPHTVAAVLEAVAQAAHLPADLEVTLEANPTSAPGSRLAEFGAAGVNRLSIGLQSLDDTELRLLGRTHSACDALRTLAEARRLFPGRVSVDLMLGLPAQQVGPWLGQLQELLHHCDDHLSLYQLSLERGTALFAQVQRGALPAPDPELAAEMYQRGRAVLREAGFHQYEVSNFARNGALSTHNWTYWQCGQYLG 298
The following BLAST results are available for this feature:
BLAST of TCONS_00021036-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSAD19.513e-7642.69Radical S-adenosyl methionine domain-containing pr... [more]
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