TCONS_00021032-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021032-protein
Unique NameTCONS_00021032-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021032-protein ID=TCONS_00021032-protein|Name=TCONS_00021032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
QRVRNAKQLGLNLTTSEKFKKHQRLDPDIKHLFKVMLIGDSGVGKTCVLI
RFKDGAFLSGSFISTVGIDFRNKTINVDGKKVKLQIWDTAGQERFRSITH
AYYRDAHALLLLYDVGSRKSFENTRAWLSEIREYAPNDAVIMLLGNKCDL
AKERQVKREEGEKLAQDYNVPFLETSAKSGLNVDLAFEAASRELMNIEAR
GKEHNGKFNIGQYVSEKEQKPGCCG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011802XLOC_011802Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021032TCONS_00021032Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 57..73
score: 24.85
coord: 33..54
score: 49.77
coord: 75..97
score: 57.46
coord: 137..150
score: 48.62
coord: 172..194
score: 42.17
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 33..197
e-value: 4.0E-100
score: 348.6
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 30..197
e-value: 1.1E-32
score: 124.6
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 11..198
e-value: 1.8E-4
score: 16.1
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 35..197
e-value: 7.4E-18
score: 75.3
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 38..222
e-value: 7.0E-5
score: 20.4
NoneNo IPR availableGENE3D3.30.70.1390coord: 31..97
e-value: 3.8E-30
score: 103.2
NoneNo IPR availableGENE3D3.40.50.300coord: 98..195
e-value: 7.4E-42
score: 141.0
NoneNo IPR availablePROSITEPS51419RABcoord: 26..224
score: 35.941
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 33..188
e-value: 4.0E-33
score: 112.5
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 34..195
e-value: 8.3E-61
score: 204.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 29..205

Blast
[Close]
BLAST of TCONS_00021032-protein vs. Swiss-Prot (Human)
Match: RAB26 (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 273.092 bits (697), Expect = 5.206e-93
Identity = 127/192 (66.15%), Postives = 156/192 (81.25%), Query Frame = 0 
Query:   33 FKVMLIGDSGVGKTCVLIRFKDGAFLSGSFISTVGIDFRNKTINVDGKKVKLQIWDTAGQERFRSITHAYYRDAHALLLLYDVGSRKSFENTRAWLSEIREYAPNDAVIMLLGNKCDLAKERQVKREEGEKLAQDYNVPFLETSAKSGLNVDLAFEAASRELMNIEARGKEHNGKFNIGQYVSEKEQKPGCC 224
            FKVML+GDSGVGKTC+L+RFKDGAFL+G+FISTVGIDFRNK ++VDG KVKLQ+WDTAGQERFRS+THAYYRDAHALLLLYDV ++ SF+N +AWL+EI EYA +D  +MLLGNK D A ER VKRE+GEKLA++Y +PF+ETSAK+GLNVDLAF A ++EL     +      +F +  YV  + +   CC
Sbjct:   64 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQRSMKAPSEP-RFRLHDYVKREGRGASCC 254
The following BLAST results are available for this feature:
BLAST of TCONS_00021032-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB265.206e-9366.15Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
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