TCONS_00020931-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020931-protein
Unique NameTCONS_00020931-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020931-protein ID=TCONS_00020931-protein|Name=TCONS_00020931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
MEPKIMSNIPNLKSEFPSMKSDFSMASILLEEKDKEKAKPKPIIPCRLEN
IKDTPWLRLNKKIAADLSSRVKPRIDNIGKSGNGGIRVRLDEMGLWKSFH
QLTNEMIVTKNGRRMFPVLKTSIQGLDPNAMYSIMLDFVPVDEHRWKFVN
GEWSRGGKPEPTSSSRVYVHPDSPNFGAHWMKNSIVFSKVKLTNKENNNN
QVVMLNSLHKYEPRMHVLKVGSKESERTVSTHSFEETVFIAVTAYQNEEI
TSLKIKYNPFAKAFLDAKERSEQQIATHPRRFEFPCIPPPTVGGPGAPCR
CSLDGYPFHRHHPSSPPEYPRSFSYPYATIYEHDGKQPRAVHYGTRLHPY
SPPSSVYPFMTPSPPPQLPPQCHPPIKPTFFAEDFQRTRHSSSSSTNHRS
CSIPGCSCNGANRYPSISVPYPHYKRPYDTESLHLKSPVQPNDTRQRRYS
TTPDIENIEQSSRENSRGSSPSISPTLKRSRNDS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011741XLOC_011741Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020931TCONS_00020931Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001699TF_T-box
IPR002070TF_Brachyury
IPR018186TF_T-box_CS
IPR008967p53-like_TF_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001699Transcription factor, T-boxPRINTSPR00937TBOXcoord: 103..127
score: 64.78
coord: 258..266
score: 79.47
coord: 168..181
score: 73.76
coord: 237..250
score: 77.95
coord: 204..218
score: 62.9
coord: 185..194
score: 65.87
IPR001699Transcription factor, T-boxSMARTSM00425tbox5coord: 85..271
e-value: 6.1E-113
score: 391.2
IPR001699Transcription factor, T-boxPFAMPF00907T-boxcoord: 88..266
e-value: 1.5E-73
score: 246.8
IPR001699Transcription factor, T-boxGENE3D2.60.40.820coord: 82..272
e-value: 5.2E-83
score: 277.0
IPR001699Transcription factor, T-boxPROSITEPS50252TBOX_3coord: 90..266
score: 72.034
IPR001699Transcription factor, T-boxCDDcd00182TBOXcoord: 85..270
e-value: 1.88078E-107
score: 319.148
IPR002070Transcription factor, BrachyuryPRINTSPR00938BRACHYURYcoord: 209..226
score: 52.02
coord: 262..272
score: 83.47
coord: 148..168
score: 65.37
coord: 303..318
score: 35.23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 432..484
IPR018186Transcription factor, T-box, conserved sitePROSITEPS01283TBOX_1coord: 95..114
IPR018186Transcription factor, T-box, conserved sitePROSITEPS01264TBOX_2coord: 169..187
IPR008967p53-like transcription factor, DNA-bindingSUPERFAMILY49417p53-like transcription factorscoord: 85..266

Blast
[Close]
BLAST of TCONS_00020931-protein vs. Swiss-Prot (Human)
Match: BRAC (Brachyury protein OS=Homo sapiens GN=T PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 1.879e-92
Identity = 151/260 (58.08%), Postives = 179/260 (68.85%), Query Frame = 0 
Query:   86 IRVRLDEMGLWKSFHQLTNEMIVTKNGRRMFPVLKTSIQGLDPNAMYSIMLDFVPVDEHRWKFVNGEWSRGGKPEPTSSSRVYVHPDSPNFGAHWMKNSIVFSKVKLTNKENNNNQVVMLNSLHKYEPRMHVLKVGSKESERTVSTHSFEETVFIAVTAYQNEEITSLKIKYNPFAKAFLDAKERSEQQ-------IATHPRRFEF------------PCIPPPTVGGP-GAPCRCSLDGYPFHRHHPSSPPEYPRSFSY 325
            +RV L+E  LW  F +LTNEMIVTKNGRRMFPVLK ++ GLDPNAMYS +LDFV  D HRWK+VNGEW  GGKPEP + S VY+HPDSPNFGAHWMK  + FSKVKLTNK N   Q +MLNSLHKYEPR+H+++VG    +R +++H F ET FIAVTAYQNEEIT+LKIKYNPFAKAFLDAKERS+ +        +  P   ++            P  P P  GG    P   S D YP  R H SSP  YP  +++
Sbjct:   42 LRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQ-IMLNSLHKYEPRIHIVRVGGP--QRMITSHCFPETQFIAVTAYQNEEITALKIKYNPFAKAFLDAKERSDHKEMMEEPGDSQQPGYSQWGWLLPGTSTLCPPANPHPQFGGALSLPSTHSCDRYPTLRSHRSSP--YPSPYAH 296
The following BLAST results are available for this feature:
BLAST of TCONS_00020931-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRAC1.879e-9258.08Brachyury protein OS=Homo sapiens GN=T PE=1 SV=1[more]
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