TCONS_00020786-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020786-protein
Unique NameTCONS_00020786-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length919

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020786-protein ID=TCONS_00020786-protein|Name=TCONS_00020786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=919bp
MAAPSDDTATSKTIASEVPFHDFAVLCEKISKTQGKERKKALMQKFIGHW
RRSHQKMHGNQKTIDSFFPAMRLTLPQLDKERAAYGMKEVVLAKYYIEAL
GLSKDSTDAKKLLNYRAPNSAKQEAGDFASVAFVILKSRCPEQGSMTIEN
INNALDSIAQANVEKERDTAKATILKVIRTTSALEQKWFIRVMLKEMKFG
LNENSIFPLYHKDALELFNVCNSLSKVCLDLHDENIELNETEISLFTPFR
PMLGQRVVLEDVEKLMHHRHFIIETKIDGERMQMHKNEDEYRYFSRNSND
YSENFGITKYRGSFTPHVTHLFKEDIKTCILDGEMVGFDDEIDNFVLKGS
NIDIKSDHLVGVHPCFVVFDVLMVNGENLANVPLEDRIKRTETLFDSERG
RLEIVERKLGKSKEDVINSINKAVDKREEGIVIKDPSSIYKPSKRKGSGW
LKLKPEYVDALGDDLDLIILGGEYGSGKRRGGMISHFLLGVAVTPDTPGE
RPTKFMTFGKVGSGYSDKELKSICDQLNPHWKKFQGPTSSIIFTDGCKEK
PDVVIEPRDSIIVQIKASEITPSDKYKCQCTMRFPRMERVRDDKSWFECM
TFDELEEMKKMADGRLSYKQKVSGDAEDTEDGPSSKKKRRTVLRVERPRS
VAQHLKGADITDIQEVSNWLNETEFCVINGPTEFSKQKLEQFIVENGGTF
VQNPTAETKCVIVEKTNFRAKNIISRENVDVVKASWFIRCLEEKQMNTYQ
PSDIIFATETTKSTFNQNYDQYGDHYTQDIENPNELKQIFDGINVDSEKN
HIQVSDIASIEQRYFHGTSKYSIFRRCRLFVPTAEVPNYPYKNMMEFVSL
EYCLHGGTIVRNIDQATHILLSQSDDLAFQDIRAIIRTKRVKPQVITELW
IRDSIDQNKMLEERPYKPA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011661XLOC_011661Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020786TCONS_00020786Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
IPR000977DNA_ligase_ATP-dep
IPR012308DNA_ligase_ATP-dep_N
IPR012309DNA_ligase_ATP-dep_C
IPR021536DNA_ligase_IV_dom
IPR012310DNA_ligase_ATP-dep_cent
IPR016059DNA_ligase_ATP-dep_CS
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003910DNA ligase (ATP) activity
GO:0005524ATP binding
GO:0003677DNA binding
GO:0003909DNA ligase activity
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0006281DNA repair
GO:0071897DNA biosynthetic process
GO:0051103DNA ligation involved in DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0051103 DNA ligation involved in DNA repair
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003909 DNA ligase activity
molecular_function GO:0003910 DNA ligase (ATP) activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 148..168
NoneNo IPR availableGENE3D2.40.50.140coord: 457..615
e-value: 1.5E-42
score: 144.9
NoneNo IPR availableGENE3D3.30.1490.70coord: 362..454
e-value: 3.3E-17
score: 62.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 620..641
NoneNo IPR availableCDDcd07968OBF_DNA_ligase_IVcoord: 462..602
e-value: 6.39766E-64
score: 210.879
NoneNo IPR availableCDDcd07903Adenylation_DNA_ligase_IVcoord: 238..459
e-value: 2.61936E-95
score: 300.264
NoneNo IPR availableSUPERFAMILY56091DNA ligase/mRNA capping enzyme, catalytic domaincoord: 210..455
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 667..744
e-value: 4.3E-4
score: 29.6
coord: 821..908
e-value: 55.0
score: 5.5
IPR001357BRCT domainGENE3D3.40.50.10190coord: 673..776
e-value: 7.0E-17
score: 61.1
IPR001357BRCT domainPFAMPF16589BRCT_2coord: 854..916
e-value: 3.1E-6
score: 27.4
coord: 681..746
e-value: 1.4E-7
score: 31.7
IPR001357BRCT domainGENE3D3.40.50.10190coord: 798..917
e-value: 3.6E-9
score: 36.3
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 855..918
score: 11.309
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 665..754
score: 13.173
IPR001357BRCT domainCDDcd00027BRCTcoord: 675..742
e-value: 2.46126E-6
score: 45.3903
IPR001357BRCT domainSUPERFAMILY52113BRCT domaincoord: 665..748
IPR001357BRCT domainSUPERFAMILY52113BRCT domaincoord: 854..917
IPR000977DNA ligase, ATP-dependentTIGRFAMTIGR00574TIGR00574coord: 84..609
e-value: 2.2E-123
score: 410.7
IPR012308DNA ligase, ATP-dependent, N-terminalGENE3D1.10.3260.10coord: 3..320
e-value: 6.4E-52
score: 176.3
IPR012308DNA ligase, ATP-dependent, N-terminalPFAMPF04675DNA_ligase_A_Ncoord: 19..211
e-value: 3.9E-38
score: 131.4
IPR012308DNA ligase, ATP-dependent, N-terminalSUPERFAMILY117018ATP-dependent DNA ligase DNA-binding domaincoord: 14..252
IPR012309DNA ligase, ATP-dependent, C-terminalPFAMPF04679DNA_ligase_A_Ccoord: 480..594
e-value: 1.5E-17
score: 63.9
IPR021536DNA ligase IV domainPFAMPF11411DNA_ligase_IVcoord: 761..794
e-value: 1.3E-9
score: 37.8
IPR012310DNA ligase, ATP-dependent, centralPFAMPF01068DNA_ligase_A_Mcoord: 251..454
e-value: 4.0E-47
score: 160.4
IPR012310DNA ligase, ATP-dependent, centralPROSITEPS50160DNA_LIGASE_A3coord: 357..493
score: 29.853
IPR016059DNA ligase, ATP-dependent, conserved sitePROSITEPS00333DNA_LIGASE_A2coord: 429..454
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 462..610

Blast
[Close]
BLAST of TCONS_00020786-protein vs. Swiss-Prot (Human)
Match: DNLI4 (DNA ligase 4 OS=Homo sapiens GN=LIG4 PE=1 SV=2)

HSP 1 Score: 776.548 bits (2004), Expect = 0.000e+0
Identity = 406/923 (43.99%), Postives = 582/923 (63.06%), Query Frame = 0 
Query:    8 TATSKTIASEVPFHDFAVLCEKISKTQGKERKKALMQKFIGHWRRSHQKMHGNQKTI-DSFFPAMRLTLPQLDKERAAYGMKEVVLAKYYIEALGLSKDSTDAKKLLNYRAPNSAKQEAGDFASVAFVILKSRCPEQGSMTIENINNALDSIAQANVEKERDTAKATILKVIRTTSALEQKWFIRVMLKEMKFGLNENSIFPLYHKDALELFNVCNSLSKVCLDLHDENIELNETEISLFTPFRPMLGQRVVLEDVEKLMHHRHFIIETKIDGERMQMHKNEDEYRYFSRNSNDYSENFGITKYRGSFTPHVTHLFKEDIKTCILDGEMVGFDDEIDNFVLKGSNIDIK-----SDHLVGVHPCFVVFDVLMVNGENLANVPLEDRIKRTETLFDSERGRLEIVERKLGKSKEDVINSINKAVDKREEGIVIKDPSSIYKPSKRKGSGWLKLKPEYVDALGDDLDLIILGGEYGSGKRRGGMISHFLLGVAVTPDTPGERPTKFMTFGKVGSGYSDKELKSICDQLNPHWKKF--QGPTSSIIFTDGCKEKPDVVIEPRDSIIVQIKASEITPSDKYKCQCTMRFPRMERVRDDKSWFECMTFDELEEMKKMADGRLSYKQ-KVSGDAEDTEDGPSSKKKRRTVLRVERPRSVAQHLKGADITDIQEVSNWLNETEFCVINGPTEFSKQKLEQFIVENGGTFVQNPTAETKCVIVEKTNFRAKNIISRENVDVVKASWFIRCLEEKQMNTYQPSDIIFATETTKSTFNQNYDQYGDHYTQDIENPNELKQIFDGINVDSEKNHIQVSD-IASIEQRYFHGTSKYSIFRRCRLFVPTAEVPN-YPYKN---MMEFVSLEYCLHGGTIVRNIDQATHILLSQSDDLAFQDIRAIIRTKRVKPQVITELWIRDSIDQNKMLEERPY 916
            + TS+T+AS VPF D     E+I K++G+  K    ++F+  WR+ H  +H N K + DSF+PAMRL LPQL++ER AYG+KE +LAK YIE L L +D  DA KLLNYR P     +AGDFA +A+ +LK RC ++GS+TI+ +N+ LDSIA  N  K +D  K ++L++I  +SALEQKW IR+++K++K G+++ +IF ++H DA EL NV   L KVC  LHD ++ L++  I+LF+ F+PML     +E +EK M H+ F IETK+DGERMQMHK+ D Y+YFSRN  +Y++ FG +   GS TP + + FK DI+ CILDGEM+ ++     F+ KG+  DIK     SD    +  C+ VFDVLMVN + L +  L  R +   ++F    GR+EIV++    +K +VI+++N+A+DKREEGI++K P SIYKP KR G GWLK+KPEYV  L D+LD++I+GG +G G  RGGM+SHFL  VA  P  PGE+P+ F T  +VGSG + KEL  +  +L  +WK F  + P SSI+      EKP+V IEP +S+IVQIKA+EI PSD YK  CT+RFPR+E++RDDK W ECMT D+LE+++  A G+L+ K   + GD E  E      KKR+   ++++   + +HLK  ++T++ ++SN   + EFCV++G     K  LE  I E GG  VQNP  +T CVI    N R KNII     DVVK +W + C + K    +QP  +I    +TK  F + YD YGD Y  D  + N+LK++F GI   +E+   +++  IA +E RY    S  S+FRR  +++ +  V N    KN    +   +LE   HG  +V  + +    ++   D     D +A  RT + K +++ E W+ DSID+ ++ EE  Y
Sbjct:    4 SQTSQTVASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCLQKGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLAAIADIEHIEKDMKHQSFYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGTKFDIKRMVEDSD----LQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQKTQAHTKNEVIDALNEAIDKREEGIMVKQPLSIYKPDKR-GEGWLKIKPEYVSGLMDELDILIVGGYWGKGS-RGGMMSHFLCAVAEKP-PPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWKPFHRKAPPSSILCG---TEKPEVYIEPCNSVIVQIKAAEIVPSDMYKTGCTLRFPRIEKIRDDKEWHECMTLDDLEQLRGKASGKLASKHLYIGGDDEPQE------KKRKAAPKMKKVIGIIEHLKAPNLTNVNKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDT-DLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKILKESWVTDSIDKCELQEENQY 909
The following BLAST results are available for this feature:
BLAST of TCONS_00020786-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNLI40.000e+043.99DNA ligase 4 OS=Homo sapiens GN=LIG4 PE=1 SV=2[more]
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