TCONS_00020566-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020566-protein
Unique Name	TCONS_00020566-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	361

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020566-protein ID=TCONS_00020566-protein|Name=TCONS_00020566-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
YESVACQLECGEFVLRKNIQNHIDTVCPCVSPCEYQDFGCTFKGTKESLQ
NHMAKNVTTHISLEMKLELQKVKDEFNKQLRAKDQVMVRVKKELDKMKST
NEELIEDLQAKGKQIGFLTEKLKIIDEIENETKRNKDDIETNKEKFNKDL
ATTKKELARIDKQIATKSPDCNLLEEIGAKANIDNLESLVTHEKFKSLER
QLAQQDKLTLEILLTPKCPFLWFIDNFKEIFNITLGRKGTLYSPPLFTEK
GYHGRLKVYIKDSPQGKADQISVYFDNLKGPYDEMLEWPMPFTSLNFTLF
INGKEVSKASSKSVERYKTWTEHFTRPINIKGRALGRPAFHKTLIENLTD
KDIVAIKFHTE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011544	XLOC_011544	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020566	TCONS_00020566	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008974	TRAF-like
IPR001293	Znf_TRAF
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 125..163
None	No IPR available	COILS	Coil	Coil	coord: 87..114
IPR008974	TRAF-like	GENE3D	2.60.210.10		coord: 214..360 e-value: 2.6E-13 score: 49.7
IPR008974	TRAF-like	SUPERFAMILY	49599	TRAF domain-like	coord: 220..341
IPR008974	TRAF-like	SUPERFAMILY	49599	TRAF domain-like	coord: 4..56
IPR001293	Zinc finger, TRAF-type	PFAM	PF02176	zf-TRAF	coord: 3..52 e-value: 4.7E-9 score: 36.7
IPR001293	Zinc finger, TRAF-type	PROSITE	PS50145	ZF_TRAF	coord: 2..50 score: 8.897
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 2..53 e-value: 6.7E-7 score: 28.9

Blast

[Close]

BLAST of TCONS_00020566-protein vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.071e-19
Identity = 93/365 (25.48%), Postives = 161/365 (44.11%), Query Frame = 0

Query:    4 VACQLECG-EFVLRKNIQNHIDTVCPCVSPCEYQDFGCTFKGTKESLQNHMAKNVTTHI--------SLEMKLE-LQKVKDEFNKQLRAKDQVMVRVKKELDKMKS---TNEELIEDLQAKGKQIGFLTEKLKIIDEIENETKRNKDDIETNKEKFNKDLATTKKELARIDKQIATKSPDCNLLEEIGAKANIDNLESLVTHEKFKSL-ERQLAQQDKLTLEILLTPK--CPFLWFIDNFKEIFN-ITLGRKGTLYSPPLFTEK-GYHGRLKVYIKDSPQGKADQISVYFDNLKGPYDEMLEWPMPFTSLNFTLFINGKEVSKASSKSVERYKTWTEHFTRPINIKGRALGRPAF-HKTLIENLT 349
            V+C  +C  + +LR  +  H+       S C ++ +GC F+GT + ++ H A +   H+        SLE K+  LQ    E NK +++    +   + E+++ K     NE  I  LQ   + I    EKLK +D+     ++N ++ ++ K    + L     EL  +DK     + +  LLE             L  H++  S+ + +LA  D L  ++L T       +W I ++K       +G+  +LYS P +T   GY    +VY+     GK   +S++F  ++G YD +L WP        TL +  +  S+       +    +  F +P      A G P F  +T++EN T
Sbjct:  202 VSCPHKCSVQTLLRSELSAHLSECVNAPSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQ---RVIDSQAEKLKELDKEIRPFRQNWEEADSMKSSV-ESLQNRVTELESVDKSAGQVARNTGLLE-----------SQLSRHDQMLSVHDIRLADMD-LRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPF---KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGT 547

The following BLAST results are available for this feature:

BLAST of TCONS_00020566-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020566-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRAF3	9.071e-19	25.48	TNF receptor-associated factor 3 OS=Homo sapiens G...	[more]

You are here

TCONS_00020566-protein (polypeptide) - C. hemisphaerica